Evidence map›Paper›PMID 26833330›Full record

ArticleAmerican journal of human genetics2016

TMEM199 Deficiency Is a Disorder of Golgi Homeostasis Characterized by Elevated Aminotransferases, Alkaline Phosphatase, and Cholesterol and Abnormal Glycosylation.

Jos C Jansen, Sharita Timal, Monique van Scherpenzeel, Helen Michelakakis, Dorothée Vicogne, Angel Ashikov, Marina Moraitou, Alexander Hoischen, Karin Huijben, Gerry Steenbergen and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 2 pooled it
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 2 syntheses or guidelines pooled it, 89 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  5. Review
  6. Review
  7. Oxr1 and Ncoa7 regulate V-ATPase to achieve optimal pH for glycosylation within the Golgi apparatus and trans-Golgi network.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
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  11. Loss of the endoplasmic reticulum protein Tmem208 affects cell polarity, development, and viability.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Article
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  15. Structural basis of V-ATPase VProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 6 countries.

Jos C JansenDepartment of Gastroenterology and Hepatology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Translational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Sharita TimalTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Monique van ScherpenzeelTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Helen MichelakakisDepartment of Enzymology and Cellular Function, Institute of Child Health, Athens 11526, Greece.
Dorothée VicogneCNRS-UMR 8576, Structural and Functional Glycobiology Unit, Federation of Research Structural & Functional Biochemistry of Biomolecular Assemblies (FRABio), University of Lille, 59655 Villeneuve d'Ascq, France.
Angel AshikovTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Marina MoraitouDepartment of Enzymology and Cellular Function, Institute of Child Health, Athens 11526, Greece.
Alexander HoischenDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Karin HuijbenTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Gerry SteenbergenTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Marjolein A W van den BoogertDepartment of Vascular Medicine, Academic Medical Center, 1105 AZ Amsterdam, the Netherlands.
Francesco PortaDepartment of Pediatrics, Azienda Ospedaliera Città della Salute e della Scienza, University of Torino, 10126 Torino, Italy.
Pier Luigi CalvoDepartment of Pediatrics, Azienda Ospedaliera Città della Salute e della Scienza, University of Torino, 10126 Torino, Italy.
Mersyni Mavrikou1(st) Department of Pediatrics, P. & A. Kyriakou Children's Hospital, Athens 11527, Greece.
Giovanna CenacchiDepartment of Biomedical and Neuromotor Sciences, Alma Mater Studiorum-University of Bologna, 40138 Bologna, Italy.
Geert van den BogaartDepartment of Tumor Immunology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Jody SalomonDepartment of Gastroenterology and Hepatology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Adriaan G HolleboomDepartment of Vascular Medicine, Academic Medical Center, 1105 AZ Amsterdam, the Netherlands.
Richard J RodenburgTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Nijmegen Centre for Mitochondrial Disorders, Department of Pediatrics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Joost P H DrenthDepartment of Gastroenterology and Hepatology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Martijn A HuynenCentre for Molecular and Biomolecular Informatics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Ron A WeversTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Eva MoravaDepartment of Human Genetics, University of Leuven, 3000 Leuven, Belgium; Hayward Genetics Center, Department of Pediatrics, Tulane University Medical School, New Orleans, LA 70112, USA.
François FoulquierCNRS-UMR 8576, Structural and Functional Glycobiology Unit, Federation of Research Structural & Functional Biochemistry of Biomolecular Assemblies (FRABio), University of Lille, 59655 Villeneuve d'Ascq, France.
Joris A VeltmanDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Clinical Genetics, Maastricht University Medical Centre, 6229 HX Maastricht, the Netherlands.
Dirk J LefeberTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands. Electronic address: dirk.lefeber@radboudumc.nl.
Radboud University Nijmegen · NLAmsterdam UMC Location University of Amsterdam · NLAzienda Ospedaliera Citta' della Salute e della Scienza di Torino · ITCentre National de la Recherche Scientifique · FRInstitute of Child Health · GRPanagiotis & Aglaia Kyriakou Children's Hospital · GRTulane University · USUniversity of Bologna · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congenital disorders of glycosylation (CDGs) form a genetically and clinically heterogeneous group of diseases with aberrant protein glycosylation as a hallmark. A subgroup of CDGs can be attributed to disturbed Golgi homeostasis. However, identification of pathogenic variants is seriously complicated by the large number of proteins involved. As part of a strategy to identify human homologs of yeast proteins that are known to be involved in Golgi homeostasis, we identified uncharacterized transmembrane protein 199 (TMEM199, previously called C17orf32) as a human homolog of yeast V-ATPase assembly factor Vph2p (also known as Vma12p). Subsequently, we analyzed raw exome-sequencing data from families affected by genetically unsolved CDGs and identified four individuals with different mutations in TMEM199. The adolescent individuals presented with a mild phenotype of hepatic steatosis, elevated aminotransferases and alkaline phosphatase, and hypercholesterolemia, as well as low serum ceruloplasmin. Affected individuals showed abnormal N- and mucin-type O-glycosylation, and mass spectrometry indicated reduced incorporation of galactose and sialic acid, as seen in other Golgi homeostasis defects. Metabolic labeling of sialic acids in fibroblasts confirmed deficient Golgi glycosylation, which was restored by lentiviral transduction with wild-type TMEM199. V5-tagged TMEM199 localized with ERGIC and COPI markers in HeLa cells, and electron microscopy of a liver biopsy showed dilated organelles suggestive of the endoplasmic reticulum and Golgi apparatus. In conclusion, we have identified TMEM199 as a protein involved in Golgi homeostasis and show that TMEM199 deficiency results in a hepatic phenotype with abnormal glycosylation.

Indexed as

HomeostasisAdultAlkaline PhosphataseAmino Acid SequenceCeruloplasminCholesterolEndoplasmic ReticulumExomeFibroblastsGenotypeGlycosylationGolgi ApparatusHumansMaleMembrane ProteinsMolecular Sequence DataAlkaline PhosphataseCeruloplasminCholesterolMembrane ProteinsTransaminasesalkaline phosphataseCongenital Disorders of GlycosylationCOPI vesicular transportelevated aminotransferasesGolgi homeostasishypercholesterolemiaTMEM199 deficiencyV-ATPase assemblyVph2p

Identifiers

PMID26833330
PMCPMC4746368
OpenAlexW2260752614

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.