ArticleScientific reports2016
Fifteen new earthworm mitogenomes shed new light on phylogeny within the Pheretima complex.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
- De Novo Assembly and Comparative Analysis of the Complete Mitochondrial Genome ofEcology and evolution · 2026Article
- A new species of the genusZooKeys · 2026Article
- A new species of theZooKeys · 2026Article
- A new species of theZooKeys · 2026Article
- Establishment of theZooKeys · 2026Article
- Complete mitochondrial genome of the Korean endemic earthwormMitochondrial DNA. Part B, Resources · 2025Article
- Two new species of theZooKeys · 2025Article
- Article
- Adaptive evolution characteristics of mitochondrial genomes in genus Aparapotamon (Brachyura, Potamidae) of freshwater crabs.BMC genomics · 2023Article
- Draft Genome Sequence of the EarthwormCurrent genomics · 2022Article
- The complete mitochondrial DNA sequences of two sibling species of lumbricid earthworms,ZooKeys · 2022Article
- The complete mitochondrial genome sequences of Japanese earthwormsMitochondrial DNA. Part B, Resources · 2021Article
- Dedifferentiation: inspiration for devising engineering strategies for regenerative medicine.NPJ Regenerative medicine · 2020Review
- The mitochondrial genome of pin-tailed snipe Gallinago stenura, and its implications for the phylogeny of Charadriiformes.PloS one · 2017Article
- Article
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6 authors.
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Abstract
The Pheretima complex within the Megascolecidae family is a major earthworm group. Recently, the systematic status of the Pheretima complex based on morphology was challenged by molecular studies. In this study, we carry out the first comparative mitogenomic study in oligochaetes. The mitogenomes of 15 earthworm species were sequenced and compared with other 9 available earthworm mitogenomes, with the main aim to explore their phylogenetic relationships and test different analytical approaches on phylogeny reconstruction. The general earthworm mitogenomic features revealed to be conservative: all genes encoded on the same strand, all the protein coding loci shared the same initiation codon (ATG), and tRNA genes showed conserved structures. The Drawida japonica mitogenome displayed the highest A + T content, reversed AT/GC-skews and the highest genetic diversity. Genetic distances among protein coding genes displayed their maximum and minimum interspecific values in the ATP8 and CO1 genes, respectively. The 22 tRNAs showed variable substitution patterns between the considered earthworm mitogenomes. The inclusion of rRNAs positively increased phylogenetic support. Furthermore, we tested different trimming tools for alignment improvement. Our analyses rejected reciprocal monophyly among Amynthas and Metaphire and indicated that the two genera should be systematically classified into one.
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