Evidence map›Paper›PMID 26833264›Full record

ArticleScientific reports2016

Novel functional microRNAs from virus-free and infected Vitis vinifera plants under water stress.

Vitantonio Pantaleo, Marco Vitali, Paolo Boccacci, Laura Miozzi, Danila Cuozzo, Walter Chitarra, Franco Mannini, Claudio Lovisolo, Giorgio Gambino

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
21.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 63 citations in OpenAlex.

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  12. Article
  13. MicroRNAs in Woody Plants.Frontiers in plant science · 2021
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. MicroRNAs inGenes · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Vitantonio PantaleoInstitute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Research Unit of Bari. Via Amendola 165/a, 70126 Bari, Italy.
Marco VitaliDepartment of Agricultural, Forest and Food Sciences, University of Torino. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
Paolo BoccacciInstitute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Grugliasco Unit. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
Laura MiozziInstitute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino. Strada delle Cacce 73, 10135 Torino, Italy.
Danila CuozzoDepartment of Agricultural, Forest and Food Sciences, University of Torino. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
Walter ChitarraInstitute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Grugliasco Unit. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
Franco ManniniInstitute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Grugliasco Unit. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
Claudio LovisoloDepartment of Agricultural, Forest and Food Sciences, University of Torino. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
Giorgio GambinoInstitute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Grugliasco Unit. Largo P. Braccini 2, 10095 Grugliasco-TO, Italy.
National Research Council · ITInstitute for Sustainable Plant Protection · ITUniversity of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) are small non-coding RNAs that regulate the post-transcriptional control of several pathway intermediates, thus playing pivotal roles in plant growth, development and response to biotic and abiotic stresses. In recent years, the grapevine genome release, small(s)-RNAseq and degradome-RNAseq together has allowed the discovery and characterisation of many miRNA species, thus rendering the discovery of additional miRNAs difficult and uncertain. Taking advantage of the miRNA responsiveness to stresses and the availability of virus-free Vitis vinifera plants and those infected only by a latent virus, we have analysed grapevines subjected to drought in greenhouse conditions. The sRNA-seq and other sequence-specific molecular analyses have allowed us to characterise conserved miRNA expression profiles in association with specific eco-physiological parameters. In addition, we here report 12 novel grapevine-specific miRNA candidates and describe their expression profile. We show that latent viral infection can influence the miRNA profiles of V. vinifera in response to drought. Moreover, study of eco-physiological parameters showed that photosynthetic rate, stomatal conductance and hydraulic resistance to water transport were significantly influenced by drought and viral infection. Although no unequivocal cause-effect explanation could be attributed to each miRNA target, their contribution to the drought response is discussed.

Indexed as

DroughtsGene Expression Regulation, PlantAdaptation, PhysiologicalConserved SequenceGenes, PlantHigh-Throughput Nucleotide SequencingMicroRNAsPhotosynthesisPlant DiseasesPlant StomataPlant VirusesRNA, PlantRNA StabilitySoilStress, PhysiologicalVitisMicroRNAsRNA, PlantSoilWater

Identifiers

PMID26833264
PMCPMC4735847
OpenAlexW2258738098

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.