Evidence map›Paper›PMID 26833181›Full record

ArticleScientific reports2016

Whole genome sequencing revealed host adaptation-focused genomic plasticity of pathogenic Leptospira.

Yinghua Xu, Yongzhang Zhu, Yuezhu Wang, Yung-Fu Chang, Ying Zhang, Xiugao Jiang, Xuran Zhuang, Yongqiang Zhu, Jinlong Zhang, Lingbing Zeng and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed, 2 pooled it
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 2 syntheses or guidelines pooled it, 118 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Leptospira and Leptospirosis.Methods in molecular biology (Clifton, N.J.) · 2026
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  11. Genetic Characterization and Zoonotic Potential ofTropical medicine and infectious disease · 2025
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  13. Molecular typing and seroepidemiology of pathogenicIranian journal of veterinary research · 2025
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  14. Serovar-specific genomic features ofFrontiers in molecular biosciences · 2025
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  15. Article
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  17. Genetic structure and diversity of theLife science alliance · 2024
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  18. Article
  19. Evolutionary insights into the emergence of virulentbioRxiv : the preprint server for biology · 2024
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  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Yinghua XuKey Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.
Yongzhang ZhuDepartment of Microbiology and Immunology, Institute of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai 200025, People's Republic of China.
Yuezhu WangShanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai Zhang Jiang Hi-TechPark, 250 Bi-Bo Road, Shanghai 201203, People's Republic of China.
Yung-Fu ChangDepartment of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, New York, 14853, United States of America.
Ying ZhangKey Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.
Xiugao JiangState Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Centre for Disease Control and Prevention, 155 Changbai Road, Changping District, 102206 Beijing, People's Republic of China.
Xuran ZhuangDepartment of Microbiology and Immunology, Institute of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai 200025, People's Republic of China.
Yongqiang ZhuShanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai Zhang Jiang Hi-TechPark, 250 Bi-Bo Road, Shanghai 201203, People's Republic of China.
Jinlong ZhangKey Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.
Lingbing ZengDepartment of Microbiology and Immunology, Institute of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai 200025, People's Republic of China.
Minjun YangShanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai Zhang Jiang Hi-TechPark, 250 Bi-Bo Road, Shanghai 201203, People's Republic of China.
Shijun LiGuizhou Provincial Centre for Disease Control and Prevention, 73 Bageyan Road, Guiyang 550004, People's Republic of China.
Shengyue WangShanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai Zhang Jiang Hi-TechPark, 250 Bi-Bo Road, Shanghai 201203, People's Republic of China.
Qiang YeKey Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.
Xiaofang XinKey Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.
Guoping ZhaoShanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai Zhang Jiang Hi-TechPark, 250 Bi-Bo Road, Shanghai 201203, People's Republic of China.
Huajun ZhengLaboratory of Medical Foods, Shanghai Institute of Planned Parenthood Research, 2140 Xie-Tu Road, Shanghai 200032, People's Republic of China.
Xiaokui GuoDepartment of Microbiology and Immunology, Institute of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai 200025, People's Republic of China.
Junzhi WangKey Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech Products, National Institutes of Food and Drug Control, Beijing 100050, People's Republic of China.
Chinese National Human Genome Center at Shanghai · CNNational Institutes for Food and Drug Control · CNShanghai Jiao Tong University · CNCornell University · USNational Institute for Communicable Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leptospirosis, caused by pathogenic Leptospira spp., has recently been recognized as an emerging infectious disease worldwide. Despite its severity and global importance, knowledge about the molecular pathogenesis and virulence evolution of Leptospira spp. remains limited. Here we sequenced and analyzed 102 isolates representing global sources. A high genomic variability were observed among different Leptospira species, which was attributed to massive gene gain and loss events allowing for adaptation to specific niche conditions and changing host environments. Horizontal gene transfer and gene duplication allowed the stepwise acquisition of virulence factors in pathogenic Leptospira evolved from a recent common ancestor. More importantly, the abundant expansion of specific virulence-related protein families, such as metalloproteases-associated paralogs, were exclusively identified in pathogenic species, reflecting the importance of these protein families in the pathogenesis of leptospirosis. Our observations also indicated that positive selection played a crucial role on this bacteria adaptation to hosts. These novel findings may lead to greater understanding of the global diversity and virulence evolution of Leptospira spp.

Indexed as

Adaptation, PhysiologicalAnimalsGenome, BacterialHigh-Throughput Nucleotide SequencingHumansLeptospiraLeptospirosisVirulence FactorsVirulence Factors

Identifiers

PMID26833181
PMCPMC4735792
OpenAlexW2286436114

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.