Evidence map›Paper›PMID 26832414›Full record

ArticleCell reports2016

Condensin Promotes Position Effects within Tandem DNA Repeats via the RITS Complex.

Haijin He, Shu Zhang, Danni Wang, Andreas Hochwagen, Fei Li

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Rex1BD and the 14-3-3 protein control heterochromatin organization at tandem repeats by linking RNAi and HDAC.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Cell cycle control of kinetochore assembly.Nucleus (Austin, Tex.) · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Antibody Pull-Down Experiments in Fission Yeast.Methods in molecular biology (Clifton, N.J.) · 2018
    Review
  16. Mutation ofGenes & development · 2017
    Article
  17. Review
  18. Review
  19. Centromere Structure and Function.Progress in molecular and subcellular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Haijin HeDepartment of Biology, New York University, New York, NY 10003-6688, USA.
Shu ZhangDepartment of Biology, New York University, New York, NY 10003-6688, USA.
Danni WangDepartment of Biology, New York University, New York, NY 10003-6688, USA.
Andreas HochwagenDepartment of Biology, New York University, New York, NY 10003-6688, USA.
Fei LiDepartment of Biology, New York University, New York, NY 10003-6688, USA. Electronic address: fl43@nyu.edu.
New York University · US

Funding

Molecular Basis of Centromere Specification and InheritanceR01GM106037 · NIGMS · NEW YORK UNIVERSITY · PI LI, FEI · 2014 to 2018
$1.5M
NIGMS NIH HHS 1R01 GM106037NIGMS NIH HHS R01 GM106037
6 · The paper itself

Abstract

Tandem repetitive DNA is highly abundant in eukaryotic genomes and contributes to transcription control and genome stability. However, how the individual sequences within tandem repeats behave remains largely unknown. Here we develop a collection of fission yeast strains with a reporter gene inserted at different units in a tandem repeat array. We show that, contrary to what is usually assumed, transcriptional silencing and replication timing among the individual repeats differ significantly. RNAi-mediated H3K9 methylation is essential for the silencing position effect. A short hairpin RNA of ura4(+) induces silencing in trans within the tandem array in a position-dependent manner. Importantly, the position effect depends on the condensin subunit, cut3(+). Cut3 promotes the position effect via interaction with the RNA-induced transcriptional silencing (RITS) complex. This study reveals variations in silencing within tandem DNA repeats and provides mechanistic insights into how DNA repeats at the individual level are regulated.

Indexed as

Adenosine TriphosphatasesDNA-Binding ProteinsDNA Replication TimingGenes, ReporterHistonesMethylationMultiprotein ComplexesProtein SubunitsRNA-Induced Silencing ComplexRNA InterferenceSchizosaccharomycesSchizosaccharomyces pombe ProteinsTandem Repeat SequencesAdenosine Triphosphatasescondensin complexesDNA-Binding ProteinsHistonesMultiprotein ComplexesProtein SubunitsRNA-Induced Silencing ComplexSchizosaccharomyces pombe Proteins

Identifiers

PMID26832414
PMCPMC4749453
OpenAlexW2271788662

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.