Evidence map›Paper›PMID 26832403›Full record

ArticleCell reports2016

Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases.

Joshua S Lichtman, Jessica A Ferreyra, Katharine M Ng, Samuel A Smits, Justin L Sonnenburg, Joshua E Elias

Abstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Trial
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  17. Review
  18. Effect of3 Biotech · 2020
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joshua S LichtmanDepartment of Chemical and Systems Biology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA.
Jessica A FerreyraDepartment of Microbiology and Immunology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA.
Katharine M NgDepartment of Microbiology and Immunology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA.
Samuel A SmitsDepartment of Microbiology and Immunology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA.
Justin L SonnenburgDepartment of Microbiology and Immunology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA.
Joshua E EliasDepartment of Chemical and Systems Biology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA. Electronic address: josh.elias@stanford.edu.

Funding

Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
NIDDK NIH HHS R01 DK085025NIDDK NIH HHS R01-DK085025
6 · The paper itself

Abstract

Improved understanding of the interplay between host and microbes stands to illuminate new avenues for disease diagnosis, treatment, and prevention. Here, we provide a high-resolution view of the dynamics between host and gut microbiota during antibiotic-induced intestinal microbiota depletion, opportunistic Salmonella typhimurium and Clostridium difficile pathogenesis, and recovery from these perturbed states in a mouse model. Host-centric proteome and microbial community profiles provide a nuanced longitudinal view, revealing the interdependence between host and microbiota in evolving dysbioses. Time- and condition-specific molecular and microbial signatures are evident and clearly distinguished from pathogen-independent inflammatory fingerprints. Our data reveal that mice recovering from antibiotic treatment or C. difficile infection retain lingering signatures of inflammation, despite compositional normalization of the microbiota, and host responses could be rapidly and durably relieved through fecal transplant. These experiments demonstrate insights that emerge from the combination of these orthogonal, untargeted approaches to the gastrointestinal ecosystem.

Indexed as

DiseaseHost-Pathogen InteractionsMicrobiotaAnimalsAnti-Bacterial AgentsFecal Microbiota TransplantationFecesFemaleInflammationMaleMiceProteomeAnti-Bacterial AgentsProteome

Identifiers

PMID26832403
PMCPMC5372703

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.