Evidence map›Paper›PMID 26831112›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Functional evidence for TCR-intrinsic specificity for MHCII.

Heather L Parrish, Neha R Deshpande, Jelena Vasic, Michael S Kuhns

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The TCR Cα Domain Regulates Responses to Self-pMHC Class II.Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  5. Article
  6. Article
  7. A biomimetic five-module chimeric antigen receptor (Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Review
  10. Coreceptors and TCR Signaling - the Strong and the Weak of It.Frontiers in cell and developmental biology · 2020
    Review
  11. Inherent reactivity of unselected TCR repertoires to peptide-MHC molecules.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Revealing the TCR bias for MHC molecules.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Heather L ParrishDepartment of Immunobiology, The University of Arizona College of Medicine, Tucson, AZ 85724;
Neha R DeshpandeDepartment of Immunobiology, The University of Arizona College of Medicine, Tucson, AZ 85724; The Arizona Center on Aging, The University of Arizona College of Medicine, Tucson, AZ 85724;
Jelena VasicDepartment of Immunobiology, The University of Arizona College of Medicine, Tucson, AZ 85724;
Michael S KuhnsDepartment of Immunobiology, The University of Arizona College of Medicine, Tucson, AZ 85724; The Arizona Center on Aging, The University of Arizona College of Medicine, Tucson, AZ 85724; The BIO-5 Institute, The University of Arizona College of Medicine, Tucson, AZ 85724 mkuhns@email.arizona.edu.
University of Arizona · US

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Teri L Bankhead · 1985 to 2026
$110.2M
Probing the mechanistic basis for T cell fate decisions (R01)R01AI101053 · NIAID · UNIVERSITY OF ARIZONA · PI KUHNS, MICHAEL S · 2012 to 2021
$3.5M
NCI NIH HHS P30 CA023074NIAID NIH HHS R01 AI101053NIAID NIH HHS R01AI101053
6 · The paper itself

Abstract

How T cells become restricted to binding antigenic peptides within class I or class II major histocompatibility complex molecules (pMHCI or pMHCII, respectively) via clonotypic T-cell receptors (TCRs) remains debated. During development, if TCR-pMHC interactions exceed an affinity threshold, a signal is generated that positively selects the thymocyte to become a mature CD4(+) or CD8(+) T cell that can recognize foreign peptides within MHCII or MHCI, respectively. But whether TCRs possess an intrinsic, subthreshold specificity for MHC that facilitates sampling of the peptides within MHC during positive selection or T-cell activation is undefined. Here we asked if increasing the frequency of lymphocyte-specific protein tyrosine kinase (Lck)-associated CD4 molecules in T-cell hybridomas would allow for the detection of subthreshold TCR-MHC interactions. The reactivity of 10 distinct TCRs was assessed in response to selecting and nonselecting MHCII bearing cognate, null, or "shaved" peptides with alanine substitutions at known TCR contact residues: Three of the TCRs were selected on MHCII and have defined peptide specificity, two were selected on MHCI and have a known pMHC specificity, and five were generated in vitro without defined selecting or cognate pMHC. Our central finding is that IL-2 was made when each TCR interacted with selecting or nonselecting MHCII presenting shaved peptides. These responses were abrogated by anti-CD4 antibodies and mutagenesis of CD4. They were also inhibited by anti-MHC antibodies that block TCR-MHCII interactions. We interpret these data as functional evidence for TCR-intrinsic specificity for MHCII.

Indexed as

T-Cell Antigen Receptor SpecificityAmino Acid SequenceAnimalsAntigen PresentationAntigensCD4-Positive T-LymphocytesCell LineCell MembraneCHO CellsCoculture TechniquesCricetulusGene Rearrangement, alpha-Chain T-Cell Antigen ReceptorGene Rearrangement, beta-Chain T-Cell Antigen ReceptorHistocompatibility Antigens Class IIHybridomasLymphocyte Specific Protein Tyrosine Kinase p56(lck)AntigensHistocompatibility Antigens Class III-A(b) antigen, mouseI-E-antigenLymphocyte Specific Protein Tyrosine Kinase p56(lck)PeptidesReceptors, Antigen, T-Cell, alpha-betaRecombinant Fusion ProteinsCD4LckMHCrestrictionTCR

Identifiers

PMID26831112
PMCPMC4801282
OpenAlexW2269500022

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.