Evidence map›Paper›PMID 26829753›Full record

ArticleNature genetics2016

The genomic basis of parasitism in the Strongyloides clade of nematodes.

Vicky L Hunt, Isheng J Tsai, Avril Coghlan, Adam J Reid, Nancy Holroyd, Bernardo J Foth, Alan Tracey, James A Cotton, Eleanor J Stanley, Helen Beasley and 28 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 159 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed, 1 pooled it
28.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

159 citing papers in PubMed, 1 synthesis or guideline pooled it, 274 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Epidemiological study of gastrointestinal parasites in yaks (Parasite epidemiology and control · 2026
    Article
  5. Article
  6. Taxonomy ofParasitology · 2026
    Review
  7. Evolution of sensory systems underlies the emergence of predatory feeding behaviors in nematodes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Review
  10. Molecular taxonomic study ofFrontiers in parasitology · 2026
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Genetic diversity withinParasitology · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 11 institutions in 7 countries.

Vicky L HuntSchool of Biological Sciences, University of Bristol, Bristol, UK.
Isheng J TsaiBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Avril CoghlanWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Adam J ReidWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Nancy HolroydWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Bernardo J FothWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Alan TraceyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
James A CottonWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-5475-3583
Eleanor J StanleyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Helen BeasleyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Hayley M BennettWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Karen BrooksWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Bhavana HarshaWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Rei KajitaniGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan.
Arpita KulkarniMax Planck Institute for Developmental Biology, Tübingen, Germany.
Dorothee HarbeckeMax Planck Institute for Developmental Biology, Tübingen, Germany.
Eiji NagayasuDivision of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Sarah NicholWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Yoshitoshi OguraDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Michael A QuailWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Nadine RandleDepartment of Infection Biology, Institute of Infection and Global Health and School of Veterinary Science, University of Liverpool, Liverpool, UK.
Dong XiaDepartment of Infection Biology, Institute of Infection and Global Health and School of Veterinary Science, University of Liverpool, Liverpool, UK.
Norbert W BrattigDepartment of Molecular Medicine, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Hanns SoblikDepartment of Molecular Medicine, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Diogo M RibeiroWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Alejandro Sanchez-FloresWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Tetsuya HayashiDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Takehiko ItohGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan.
Dee R DenverDepartment of Intergrative Biology, Oregon State University, Corvallis, Oregon, USA.
Warwick GrantDepartment of Animal, Plant and Soil Sciences, La Trobe University, Melbourne, Victoria, Australia.
Jonathan D StoltzfusDepartment of Pathobiology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
James B LokDepartment of Pathobiology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Haruhiko MurayamaDivision of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Jonathan WastlingDepartment of Infection Biology, Institute of Infection and Global Health and School of Veterinary Science, University of Liverpool, Liverpool, UK.
Adrian StreitMax Planck Institute for Developmental Biology, Tübingen, Germany.
Taisei KikuchiDivision of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Mark VineySchool of Biological Sciences, University of Bristol, Bristol, UK.
Matthew BerrimanWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-9581-0377
Wellcome Sanger Institute · GBUniversity of Miyazaki · JPMax Planck Institute for Developmental Biology · DEUniversity of Liverpool · GBBernhard Nocht Institute for Tropical Medicine · DEKyushu University · JPTokyo Institute of Technology · JPUniversity of Bristol · GBUniversity of Pennsylvania · USLa Trobe University · AUOregon State University · US

Funding

X-LINKED SEVERE COMBINED IMMUNODEFICIENCY IN THE DOGP40RR002512 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI HASKINS, MARK E · 1985 to 2011
$7.6M
INSULIN-LIKE SIGNALING IN PARASITIC NEMATODE DEVELOPMENTR01AI050668 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HERBERT, DE'BROSKI R · 2002 to 2023
$7.1M
Training in bacteriologyT32AI060516 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D, ZHU, JUN · 2006 to 2015
$2.0M
Mechanisms and Treatment of Chronic, Latent Human StrongyloidiasisR33AI105856 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ABRAHAM, DAVID, LOK, JAMES B · 2015 to 2017
$1.4M
Mechanisms and Treatment of Chronic, Latent Human StrongyloidiasisR21AI105856 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ABRAHAM, DAVID, LOK, JAMES B · 2013 to 2014
$444k
NCRR NIH HHS P40 RR002512NCRR NIH HHS RR02512NIAID NIH HHS AI050668NIAID NIH HHS AI060516NIAID NIH HHS AI105856NIAID NIH HHS R01 AI050668NIAID NIH HHS R21 AI105856NIAID NIH HHS R33 AI105856NIAID NIH HHS T32 AI060516Wellcome TrustWellcome Trust 094462/Z/10/ZWellcome Trust 098051
6 · The paper itself

Abstract

Soil-transmitted nematodes, including the Strongyloides genus, cause one of the most prevalent neglected tropical diseases. Here we compare the genomes of four Strongyloides species, including the human pathogen Strongyloides stercoralis, and their close relatives that are facultatively parasitic (Parastrongyloides trichosuri) and free-living (Rhabditophanes sp. KR3021). A significant paralogous expansion of key gene families--families encoding astacin-like and SCP/TAPS proteins--is associated with the evolution of parasitism in this clade. Exploiting the unique Strongyloides life cycle, we compare the transcriptomes of the parasitic and free-living stages and find that these same gene families are upregulated in the parasitic stages, underscoring their role in nematode parasitism.

Indexed as

GenomicsAnimalsBiological EvolutionHumansLife Cycle StagesStrongyloidesStrongyloidiasisSymbiosisTranscriptome

Identifiers

PMID26829753
PMCPMC4948059
OpenAlexW2268489608

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.