Evidence map›Paper›PMID 26829320›Full record

ArticleNature biotechnology2016

Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain.

Benjamin E Deverman, Piers L Pravdo, Bryan P Simpson, Sripriya Ravindra Kumar, Ken Y Chan, Abhik Banerjee, Wei-Li Wu, Bin Yang, Nina Huber, Sergiu P Pasca and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 701 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
701citing papers in PubMed, 2 pooled it
80.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

701 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,038 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

641 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Benjamin E DevermanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.ORCID http://orcid.org/0000-0002-6223-9303
Piers L PravdoDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Bryan P SimpsonDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Sripriya Ravindra KumarDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Ken Y ChanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Abhik BanerjeeDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Wei-Li WuDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Bin YangDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Nina HuberDepartment of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, California, USA.
Sergiu P PascaDepartment of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, California, USA.
Viviana GradinaruDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.ORCID http://orcid.org/0000-0001-5868-348X
California Institute of Technology · USStanford University · US

Funding

Gaining insight into psychiatric disease by engineering piece by piece the human brain in vitro.R01MH107800 · NIMH · STANFORD UNIVERSITY · PI PASCA, SERGIU · 2015 to 2024
$5.6M
Integrative Molecular and Phenotype Analysis of 22q11.2 Deletion SyndromeR01MH100900 · NIMH · STANFORD UNIVERSITY · PI HALLMAYER, JOACHIM F · 2013 to 2017
$4.8M
Neuromodulation and Neurodegeneration: the Missing Link and Mechanisms of ActionDP2NS087949 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GRADINARU, VIVIANA · 2013 to 2019
$4.1M
Time-Reversal Optical Focusing for Noninvasive OptogeneticsU01NS090577 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GRADINARU, VIVIANA, YANG, CHANGHUEI · 2014 to 2016
$2.0M
Intact Circuit Assessment of Aging Dopamine Neurons vis Optogenetics and CLARITYR01AG047664 · NIA · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GRADINARU, VIVIANA · 2014 to 2018
$2.0M
Engineering Microbial Opsins for Neuroscience via Structure-Guided RecombinationR21MH103824 · NIMH · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ARNOLD, FRANCES H, GRADINARU, VIVIANA · 2014 to 2015
$458k
NCCDPHP CDC HHS 1DP2NS087949NIA NIH HHS 1R01AG047664NIA NIH HHS R01 AG047664NIMH NIH HHS 1R01MH100900NIMH NIH HHS 1R01MH100900-02S1NIMH NIH HHS 1R21MH103824-01NIMH NIH HHS R01 MH100900NIMH NIH HHS R01 MH107800NIMH NIH HHS R01MH107800NIMH NIH HHS R21 MH103824NINDS NIH HHS 1U01NS090577NINDS NIH HHS DP2 NS087949NINDS NIH HHS U01 NS090577
6 · The paper itself

Abstract

Recombinant adeno-associated viruses (rAAVs) are commonly used vehicles for in vivo gene transfer. However, the tropism repertoire of naturally occurring AAVs is limited, prompting a search for novel AAV capsids with desired characteristics. Here we describe a capsid selection method, called Cre recombination-based AAV targeted evolution (CREATE), that enables the development of AAV capsids that more efficiently transduce defined Cre-expressing cell populations in vivo. We use CREATE to generate AAV variants that efficiently and widely transduce the adult mouse central nervous system (CNS) after intravenous injection. One variant, AAV-PHP.B, transfers genes throughout the CNS with an efficiency that is at least 40-fold greater than that of the current standard, AAV9 (refs. 14,15,16,17), and transduces the majority of astrocytes and neurons across multiple CNS regions. In vitro, it transduces human neurons and astrocytes more efficiently than does AAV9, demonstrating the potential of CREATE to produce customized AAV vectors for biomedical applications.

Indexed as

AnimalsDependovirusFemaleGenetic EngineeringGenetic VectorsHEK293 CellsHumansIntegrasesMiceTransfectionCre recombinaseIntegrases

Identifiers

PMID26829320
PMCPMC5088052
OpenAlexW2256579886

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.