Evidence map›Paper›PMID 26827947›Full record

ReviewVitamins and hormones2016

Genomic Determinants of Vitamin D-Regulated Gene Expression.

J Wesley Pike, Mark B Meyer, Nancy A Benkusky, Seong Min Lee, Hillary St John, Alex Carlson, Melda Onal, Sohel Shamsuzzaman

Abstract readReview
In one paragraph

Review in Vitamins and hormones, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
  2. Review
  3. Kidney deletions of Cyp27b1 fail to reduce serum 1,25(OH)The Journal of steroid biochemistry and molecular biology · 2025
    Article
  4. Article
  5. Review
  6. Structure and the Anticancer Activity of Vitamin D Receptor Agonists.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Article
  9. Is There a Role of Vitamin D in Alzheimer's Disease?CNS & neurological disorders drug targets · 2024
    Review
  10. Article
  11. Article
  12. Genomic mechanisms controlling renal vitamin D metabolism.The Journal of steroid biochemistry and molecular biology · 2023
    Article
  13. Review
  14. Article
  15. Vitamin D in Neurological Diseases.International journal of molecular sciences · 2022
    Review
  16. Review
  17. Review
  18. Review
  19. Analysis of 1,25-Dihydroxyvitamin DMolecular and cellular biology · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

J Wesley PikeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA. Electronic address: pike@biochem.wisc.edu.
Mark B MeyerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Nancy A BenkuskyDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Seong Min LeeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Hillary St JohnDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Alex CarlsonDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Melda OnalDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Sohel ShamsuzzamanDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA.

Funding

Molecular Mechanisms of RANKL Activation in OsteoblastsR01DK074993 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2007 to 2017
$4.0M
BONE CELL REGULATION OF THE VITAMIN D RECEPTOR GENER01AR045173 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 1999 to 2015
$3.5M
Dynamic Mechanisms of Vitamin D-Induced Gene ExpressionR01DK072281 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2005 to 2012
$2.6M
Integrative genomics to define osteocyte differentiation, regulation and functionR01AR064424 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2014 to 2018
$1.7M
NIAMS NIH HHS AR-045173NIAMS NIH HHS AR-062442NIAMS NIH HHS R01 AR045173NIAMS NIH HHS R01 AR064424NIDDK NIH HHS DK-072281NIDDK NIH HHS DK-074993NIDDK NIH HHS R01 DK072281NIDDK NIH HHS R01 DK074993
6 · The paper itself

Abstract

Insight into mechanisms that link the actions of 1,25-dihydroxyvitamin D3 (1,25(OH)2D3) to the regulation of gene expression has evolved extensively since the initial discovery of a nuclear protein known as the vitamin D receptor (VDR). Perhaps most important was the molecular cloning of this receptor which enabled its inclusion within the nuclear receptor gene family and further studies of both its structure and regulatory function. Current studies are now refocused on the vitamin D hormone's action at the genome, where VDR together with other transcription factors coordinates the recruitment of chromatin active coregulatory complexes that participate directly in the modification of gene output. These studies highlight the role of chromatin in the expression of genes and the dynamic impact of the epigenetic landscape that contextualizes individual gene loci thus influencing the VDR's transcriptional actions. In this chapter, we summarize advances made over the past few years in understanding vitamin D action on a genome-wide scale, focusing on overarching principles that have emerged at this level. Of particular significance is the finding that dynamic changes that occur to the genome during cellular differentiation at both genetic and epigenetic levels profoundly alter the ability of 1,25(OH)2D3 and its receptor to regulate gene expression. We address the broad impact of differentiation on specific epigenetic histone modifications that occur across the genome and the ability of the VDR to influence this activity at selected gene loci as well. These studies advance our understanding of not only vitamin D action but also of the complex and dynamic role played by the genome itself as a major determinant of VDR activity.

Indexed as

CalcitriolGene Expression RegulationGenomicsHumansOsteoblastsReceptors, CalcitriolVitamin DCalcitriolReceptors, CalcitriolVitamin DDistal gene regulationGenome-wide ChIP-seq analysisHistone epigenetic modificationLigand-independent DNA bindingOsteoblast-lineage cellsTranscription

Identifiers

PMID26827947
PMCPMC5113140

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.