Evidence map›Paper›PMID 26826387›Full record

ArticleBiochemical and biophysical research communications2016

Plant homologs of mammalian MBT-domain protein-regulated KDM1 histone lysine demethylases do not interact with plant Tudor/PWWP/MBT-domain proteins.

Irfan Sadiq, Ido Keren, Vitaly Citovsky

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemical and biophysical research communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Irfan SadiqDepartment of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY, 11794-5215, USA; Department of Biosciences, COMSATS Institute of Information Technology Islamabad, Park Road, Islamabad, 44000, Pakistan. Electronic address: irfan_sadiq@comsats.edu.pk.
Ido KerenDepartment of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY, 11794-5215, USA. Electronic address: ido.keren@stonybrook.edu.
Vitaly CitovskyDepartment of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY, 11794-5215, USA. Electronic address: vitaly.citovsky@stonybrook.edu.
State University of New York · US

Funding

TRANSPORT THROUGH PLASMODESMATAR01GM050224 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CITOVSKY, VITALY H · 1994 to 2020
$5.7M
NIGMS NIH HHS R01 GM050224NIGMS NIH HHS R01GM50224
6 · The paper itself

Abstract

Histone lysine demethylases of the LSD1/KDM1 family play important roles in epigenetic regulation of eukaryotic chromatin, and they are conserved between plants and animals. Mammalian LSD1 is thought to be targeted to its substrates, i.e., methylated histones, by an MBT-domain protein SFMBT1 that represents a component of the LSD1-based repressor complex and binds methylated histones. Because MBT-domain proteins are conserved between different organisms, from animals to plants, we examined whether the KDM1-type histone lysine demethylases KDM1C and FLD of Arabidopsis interact with the Arabidopsis Tudor/PWWP/MBT-domain SFMBT1-like proteins SL1, SL2, SL3, and SL4. No such interaction was detected using the bimolecular fluorescence complementation assay in living plant cells. Thus, plants most likely direct their KDM1 chromatin-modifying enzymes to methylated histones of the target chromatin by a mechanism different from that employed by the mammalian cells.

Indexed as

ArabidopsisArabidopsis ProteinsBinding SitesHistone DeacetylasesHistone DemethylasesMADS Domain ProteinsProtein BindingProtein Interaction MappingProtein Structure, TertiarySpecies SpecificityArabidopsis Proteinsflowering locus D protein, ArabidopsisHistone DeacetylasesHistone DemethylasesMADS Domain ProteinsArabidopsisHistone lysine demethylasesKDM1Tudor/PWWP/MBT domain proteins

Identifiers

PMID26826387
PMCPMC4753086
OpenAlexW2296699901

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.