Evidence map›Paper›PMID 26826217›Full record

ArticleJournal of experimental botany2016

A new three-locus model for rootstock-induced dwarfing in apple revealed by genetic mapping of root bark percentage.

Nicola Harrison, Richard J Harrison, Nuria Barber-Perez, Emma Cascant-Lopez, Magdalena Cobo-Medina, Marzena Lipska, Rebeca Conde-Ruíz, Philip Brain, Peter J Gregory, Felicidad Fernández-Fernández

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
8.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 77 citations in OpenAlex.

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  15. Knockout of the S-acyltransferase Gene,International journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Nicola HarrisonEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK Centre for Food Security, School of Agriculture, Policy and Development, University of Reading, Whiteknights, PO Box 237, Reading RG6 6AR, UK nicola.harrison@emr.ac.uk.
Richard J HarrisonEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK Centre for Food Security, School of Agriculture, Policy and Development, University of Reading, Whiteknights, PO Box 237, Reading RG6 6AR, UK.
Nuria Barber-PerezEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK.
Emma Cascant-LopezEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK Centre for Food Security, School of Agriculture, Policy and Development, University of Reading, Whiteknights, PO Box 237, Reading RG6 6AR, UK.
Magdalena Cobo-MedinaEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK.
Marzena LipskaEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK.
Rebeca Conde-RuízEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK.
Philip BrainEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK.
Peter J GregoryEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK Centre for Food Security, School of Agriculture, Policy and Development, University of Reading, Whiteknights, PO Box 237, Reading RG6 6AR, UK.
Felicidad Fernández-FernándezEast Malling Research, New Road, East Malling, Kent ME19 6BJ, UK.
East Malling Research (United Kingdom) · GBUniversity of Reading · GB

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

Rootstock-induced dwarfing of apple scions revolutionized global apple production during the twentieth century, leading to the development of modern intensive orchards. A high root bark percentage (the percentage of the whole root area constituted by root cortex) has previously been associated with rootstock-induced dwarfing in apple. In this study, the root bark percentage was measured in a full-sib family of ungrafted apple rootstocks and found to be under the control of three loci. Two quantitative trait loci (QTLs) for root bark percentage were found to co-localize to the same genomic regions on chromosome 5 and chromosome 11 previously identified as controlling dwarfing, Dw1 and Dw2, respectively. A third QTL was identified on chromosome 13 in a region that has not been previously associated with dwarfing. The development of closely linked sequence-tagged site markers improved the resolution of allelic classes, thereby allowing the detection of dominance and epistatic interactions between loci, with high root bark percentage only occurring in specific allelic combinations. In addition, we report a significant negative correlation between root bark percentage and stem diameter (an indicator of tree vigour), measured on a clonally propagated grafted subset of the mapping population. The demonstrated link between root bark percentage and rootstock-induced dwarfing of the scion leads us to propose a three-locus model that is able to explain levels of dwarfing from the dwarf 'M.27' to the semi-invigorating rootstock 'M.116'. Moreover, we suggest that the QTL on chromosome 13 (Rb3) might be analogous to a third dwarfing QTL, Dw3, which has not previously been identified.

Indexed as

Chromosome MappingGenetic LociModels, GeneticGenetic LinkageGenetic MarkersGenotypeMalusPhenotypePlant BarkPlant RootsPlant StemsPolymorphism, Single NucleotideQuantitative Trait LociSeasonsGenetic MarkersApplegraftingMalus × domesticaroot anatomyroot bark percentageroot cortexrootstockrootstock-induced dwarfingscion.

Identifiers

PMID26826217
PMCPMC4783367
OpenAlexW2293693257

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.