Evidence map›Paper›PMID 26824956›Full record

ArticleAntimicrobial agents and chemotherapy2016

Characterization of VCC-1, a Novel Ambler Class A Carbapenemase from Vibrio cholerae Isolated from Imported Retail Shrimp Sold in Canada.

Chand S Mangat, David Boyd, Nicol Janecko, Sarah-Lynn Martz, Andrea Desruisseau, Michael Carpenter, Richard J Reid-Smith, Michael R Mulvey

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Public health aspects ofEFSA journal. European Food Safety Authority · 2024
    Article
  4. Review
  5. Virulence and resistance patterns ofFrontiers in microbiology · 2023
    Article
  6. Insights into Carbapenem Resistance inInternational journal of molecular sciences · 2022
    Review
  7. Carbapenem-resistantEpidemiology and infection · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Surveillance and Genomics of ToxigenicFrontiers in microbiology · 2019
    Article
  18. blaEnvironmental science and pollution research international · 2018
    Article
  19. Article
  20. VIM-1 carbapenemase-producingEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2017
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Chand S MangatNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada.
David BoydNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada.
Nicol JaneckoCentre for Food-Borne, Environmental, and Zoonotic Infectious Diseases, Guelph, ON, Canada.
Sarah-Lynn MartzNational Microbiology Laboratory, Public Health Agency of Canada, Guelph, ON, Canada.
Andrea DesruisseauNational Microbiology Laboratory, Public Health Agency of Canada, Guelph, ON, Canada.
Michael CarpenterNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada.
Richard J Reid-SmithCentre for Food-Borne, Environmental, and Zoonotic Infectious Diseases, Guelph, ON, Canada.
Michael R MulveyNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada Michael.Mulvey@phac-aspc.gc.ca.
Public Health Agency of Canada · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One of the core goals of the Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS) is to monitor major meat commodities for antimicrobial resistance. Targeted studies with methodologies based on core surveillance protocols are used to examine other foods, e.g., seafood, for antimicrobial resistance to detect resistances of concern to public health. Here we report the discovery of a novel Ambler class A carbapenemase that was identified in a nontoxigenic strain of Vibrio cholerae (N14-02106) isolated from shrimp that was sold for human consumption in Canada. V. cholerae N14-02106 was resistant to penicillins, carbapenems, and monobactam antibiotics; however, PCR did not detect common β-lactamases. Bioinformatic analysis of the whole-genome sequence of V. cholerae N14-02106 revealed on the large chromosome a novel carbapenemase (referred to here as VCC-1, for Vibrio cholerae carbapenemase 1) with sequence similarity to class A enzymes. Two copies of blaVCC-1 separated and flanked by ISVch9 (i.e., 3 copies of ISVch9) were found in an acquired 8.5-kb region inserted into a VrgG family protein gene. Cloned blaVCC-1 conferred a β-lactam resistance profile similar to that in V. cholerae N14-02106 when it was transformed into a susceptible laboratory strain of Escherichia coli. Purified VCC-1 was found to hydrolyze penicillins, 1st-generation cephalosporins, aztreonam, and carbapenems, whereas 2nd- and 3rd-generation cephalosporins were poor substrates. Using nitrocefin as a reporter substrate, VCC-1 was moderately inhibited by clavulanic acid and tazobactam but not EDTA. In this report, we present the discovery of a novel class A carbapenemase from the food supply.

Indexed as

Amino Acid SequenceAnimalsAztreonamBacterial ProteinsBase Sequencebeta-LactamasesCanadaCarbapenemsCephalosporinsClavulanic AcidDrug Resistance, Multiple, BacterialGenome, BacterialHumansMicrobial Sensitivity TestsPenaeidaePenicillanic AcidAztreonamBacterial Proteinsbeta-LactamasescarbapenemaseCarbapenemsCephalosporinsClavulanic AcidPenicillanic AcidPenicillinsTazobactam

Identifiers

PMID26824956
PMCPMC4775928
OpenAlexW2237445887

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.