Evidence map›Paper›PMID 26823958›Full record

ArticleStandards in genomic sciences2016

Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain.

Jerson Garita-Cambronero, Ana Palacio-Bielsa, María M López, Jaime Cubero

Open access · goldAbstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Specific and sensitive detection tools forFrontiers in plant science · 2023
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  3. Article
  4. Comparative Genomics ofMicroorganisms · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jerson Garita-CambroneroInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Madrid, Spain.
Ana Palacio-BielsaCentro de Investigación y Tecnología Agroalimentaria de Aragón, Zaragoza, Spain.
María M LópezInstituto Valenciano de Investigaciones Agrarias, Valencia, Spain.
Jaime CuberoInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Madrid, Spain.ORCID 0000-0002-4314-857X
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ESCentro de Investigación y Tecnología Agroalimentaria de Aragón · ESInstituto Valenciano de Investigaciones Agrarias · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xanthomonas arboricola is a species in genus Xanthomonas which is mainly comprised of plant pathogens. Among the members of this taxon, X. arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond, is distributed worldwide although it is considered a quarantine pathogen in the European Union. Herein, we report the draft genome sequence, the classification, the annotation and the sequence analyses of a virulent strain, IVIA 2626.1, and an avirulent strain, CITA 44, of X. arboricola associated with Prunus spp. The draft genome sequence of IVIA 2626.1 consists of 5,027,671 bp, 4,720 protein coding genes and 50 RNA encoding genes. The draft genome sequence of strain CITA 44 consists of 4,760,482 bp, 4,250 protein coding genes and 56 RNA coding genes. Initial comparative analyses reveals differences in the presence of structural and regulatory components of the type IV pilus, the type III secretion system, the type III effectors as well as variations in the number of the type IV secretion systems. The genome sequence data for these strains will facilitate the development of molecular diagnostics protocols that differentiate virulent and avirulent strains. In addition, comparative genome analysis will provide insights into the plant-pathogen interaction during the bacterial spot disease process.

Indexed as

Bacterial spot diseasePlant pathogenic bacteriaPrunus spp.Stone fruitsXanthomonas arboricola

Identifiers

PMID26823958
PMCPMC4730658
OpenAlexW2271660134

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.