Evidence map›Paper›PMID 26823957›Full record

ArticleStandards in genomic sciences2016

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing.

Jun-Yi Zhang, Rui Guan, Hu-Jun Zhang, Hua Li, Peng Xiao, Gong-Liang Yu, Lei Du, De-Min Cao, Bing-Chuan Zhu, Ren-Hui Li and 1 more

Abstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Utility of a PCR-based method for rapid and specific detection of toxigenicJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
  6. Obtaining Genome Sequences of Mutualistic Bacteria in SingleInternational journal of molecular sciences · 2019
    Article
  7. Article
  8. Characterization ofFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jun-Yi Zhang *State Key Laboratory of Bioelectronics, School of Biological Sciences and Medical Engineering, Southeast University, Nanjing, 210096 China.
Rui Guan *State Key Laboratory of Bioelectronics, School of Biological Sciences and Medical Engineering, Southeast University, Nanjing, 210096 China.
Hu-Jun ZhangWuxi Environmental Monitoring Center, Wuxi, 214121 China.
Hua LiInstitute of Hydrobiology, The Chinese Academy of Sciences, Wuhan, Hubei 430072 China.
Peng XiaoShenzhen Key Laboratory for Marine Bio-resource and Eco-environment, College of Life Sciences, Shenzhen University, Shenzhen, 518060 China.
Gong-Liang YuInstitute of Hydrobiology, The Chinese Academy of Sciences, Wuhan, Hubei 430072 China.
Lei DuNextomics Biosciences Co., Ltd., Wuhan, Hubei 430072 China.
De-Min CaoNextomics Biosciences Co., Ltd., Wuhan, Hubei 430072 China.
Bing-Chuan ZhuWuxi Environmental Monitoring Center, Wuxi, 214121 China.
Ren-Hui LiInstitute of Hydrobiology, The Chinese Academy of Sciences, Wuhan, Hubei 430072 China.
Zu-Hong LuState Key Laboratory of Bioelectronics, School of Biological Sciences and Medical Engineering, Southeast University, Nanjing, 210096 China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cyanobacterial genus Microcystis is well known as the main group that forms harmful blooms in water. A strain of Microcystis, M. panniformis FACHB1757, was isolated from Meiliang Bay of Lake Taihu in August 2011. The whole genome was sequenced using PacBio RS II sequencer with 48-fold coverage. The complete genome sequence with no gaps contained a 5,686,839 bp chromosome and a 38,683 bp plasmid, which coded for 6,519 and 49 proteins, respectively. Comparison with strains of M. aeruginosa and some other water bloom-forming cyanobacterial species revealed large-scale structure rearrangement and length variation at the genome level along with 36 genomic islands annotated genome-wide, which demonstrates high plasticity of the M. panniformis FACHB1757 genome and reveals that Microcystis has a flexible genome evolution.

Indexed as

Comparative genomicsLake TaihuMicrocystisMicrocystis panniformis FACHB1757Third-generation sequencingWater bloom

Identifiers

PMID26823957
PMCPMC4730716

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.