Evidence map›Paper›PMID 26823482›Full record

ArticleJournal of biochemistry2016

A/T gap tolerance in the core sequence and flanking sequence requirements of non-canonical p53 response elements.

Bi-He Cai, Chung-Faye Chao, Hwang-Chi Lin, Hua-Ying Huang, Reiji Kannagi, Jang-Yi Chen

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Article in Journal of biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Bi-He CaiDepartment of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan, Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chung-Faye ChaoDepartment of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan.
Hwang-Chi LinDivision of Plastic Surgery, Shin Kong Wu Ho-Su Memorial Hospital, Taipei, Taiwan, Republic of China and.
Hua-Ying HuangDepartment of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan.
Reiji KannagiInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan, Research Complex for Medical Frontiers, Aichi Medical University, Aichi, Japan.
Jang-Yi ChenDepartment of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan, jychen01@ndmctsgh.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The canonical core sequence of the p53 response element, CATG, has a two-base A/T gap. Previously, we found that p53 can also activate a non-canonical four-base A/T gap CATATG core sequence. In this study, we investigated the possible number of A/T bases used by p53 and showed that a six-base A/T gap CATATATG core sequence was the maximum A/T gap in the p53 response element that could be upregulated by p53 and p63. Canonical and non-canonical p53 response elements also have three-base flanking sequences. A/T bases could be substituted by G/C bases, including CACACG and CGTGTG, but not CGCGCG. We found that the SV40 promoter with functional six- and two-base A/T gap core sequences could be activated by TAp63γ and that TAp63γ could upregulate SV40 small and large T antigens expression in COS7 cells. We also found that the distal region of PUMA promoter with functional two six-base A/T gap core sequences could be activated by TAp63γ in 293T cells. These new findings could provide novel rules for the non-canonical p53 family response element and could extend the entire p53 family regulation network.

Indexed as

AnimalsCell LineChlorocebus aethiopsCOS CellsGene Expression RegulationGene Regulatory NetworksHumansResponse ElementsTranscription FactorsTumor Suppressor Protein p53Tumor Suppressor ProteinsTP53 protein, humanTP63 protein, humanTranscription FactorsTumor Suppressor Protein p53Tumor Suppressor Proteinsflanking sequencenon-canonicalp53p63response element

Identifiers

PMID26823482
PMCPMC4892394

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.