ArticleBMC microbiology2016
Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study.
Article in BMC microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Isolation of Lytic Bacteriophages ofVeterinary sciences · 2025Article
- The prototypic crAssphage is a linear phage-plasmid.Cell host & microbe · 2025Article
- Microplastics of Broad Size Range Reduce Bacteriophage Activity in Aqueous Environments.The journal of physical chemistry. B · 2025Article
- Genome analysis reveals diverse novel psychrotolerantISME communications · 2025Article
- Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle.bioRxiv : the preprint server for biology · 2024Article
- A Flexible and Efficient Microfluidics Platform for the Characterization and Isolation of Novel Bacteriophages.Applied and environmental microbiology · 2023Article
- Casposons - silent heroes of the CRISPR-Cas systems evolutionary history.EXCLI journal · 2023Review
- Soil pH, Calcium Content and Bacteria as Major Factors Responsible for the Distribution of the Known Fraction of the DNA Bacteriophage Populations in Soils of Luxembourg.Microorganisms · 2022Article
- Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira.Scientific reports · 2018Article
- Characterization and diversity of phages infecting Aeromonas salmonicida subsp. salmonicida.Scientific reports · 2017Article
- Erratum to: Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study.BMC microbiology · 2016Article
- The papers presented at 7th Young Scientists School "Systems Biology and Bioinformatics" (SBB'15): Introductory Note. Introduction.BMC genetics · 2016Article
- Piggyback-the-Winner in host-associated microbial communities.NPJ biofilms and microbiomes · 2016Article
Corrections and comments
- Erratum issued
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundBacteriophages are known to be one of the driving forces of bacterial evolution. Besides promoting horizontal transfer of genes between cells, they may induce directional selection of cells (for instance, according to more or less resistance to phage infection). Switching between lysogenic and lytic pathways results in various types of (co)evolution in host-phage systems. Spatial (more generally, ecological) organization of the living environment is another factor affecting evolution. In this study, we have simulated and analyzed a series of computer models of microbial communities evolving in spatially distributed environments under the pressure of phage infection.
resultsWe modeled evolving microbial communities living in spatially distributed flowing environments. Non-specific nutrient supplied in the only spatial direction, resulting in its non-uniform distribution in environment. We varied the time and the location of initial phage infestation of cells as well as switched chemotaxis on and off. Simulations were performed with the Haploid evolutionary constructor software ( http://evol-constructor.bionet.nsc.ru/ ).
conclusionSimulations have shown that the spatial location of initial phage invasion may lead to different evolutionary scenarios. Phage infection decreases the speciation rate by more than one order as far as intensified selection blocks the origin of novel viable populations/species, which could carve out potential ecological niches. The dependence of speciation rate on the invasion node location varied on the time of invasion. Speciation rate was found to be lower when the phage invaded fully formed community of sedentary cells (at middle and late times) at the species-rich regions. This is especially noticeable in the case of late-time invasion. Our simulation study has shown that phage infection affects evolution of microbial community slowing down speciation and stabilizing the system as a whole. This influencing varied in its efficiency depending on spatially-ecological factors as well as community state at the moment of phage invasion.
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