Evidence map›Paper›PMID 26822672›Full record

ArticleIntegrative biology : quantitative biosciences from nano to macro2016

Precisely parameterized experimental and computational models of tissue organization.

Jared M Molitoris, Saurabh Paliwal, Rajesh B Sekar, Robert Blake, JinSeok Park, Natalia A Trayanova, Leslie Tung, Andre Levchenko

Abstract read
In one paragraph

Article in Integrative biology : quantitative biosciences from nano to macro, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Modeling Inherited Arrhythmia Disorders Using Induced Pluripotent Stem Cell-Derived Cardiomyocytes.Circulation journal : official journal of the Japanese Circulation Society · 2016
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jared M Molitoris *Department of Biomedical Engineering, The Johns Hopkins University, 720 Rutland Ave., Baltimore, MD, 21205, USA.
Saurabh Paliwal *Department of Biomedical Engineering, The Johns Hopkins University, 720 Rutland Ave., Baltimore, MD, 21205, USA.
Rajesh B SekarDepartment of Biomedical Engineering, The Johns Hopkins University, 720 Rutland Ave., Baltimore, MD, 21205, USA.
Robert BlakeInstitute for Computational Medicine, Johns Hopkins University, 3400 N. Charles St., Hackerman Hall Room 216, Baltimore, MD, 21218, USA.
JinSeok ParkDepartment of Biomedical Engineering and Yale Systems Biology Institute, Yale University, P.O. Box 208260, New Haven, CT, 06520, USA.
Natalia A TrayanovaDepartment of Biomedical Engineering and Institute for Computational Medicine, Johns Hopkins University, 3400 N. Charles St., Hackerman Hall Room 216, Baltimore, MD, 21218, USA.
Leslie TungDepartment of Biomedical Engineering, The Johns Hopkins University, 720 Rutland Ave., Baltimore, MD, 21205, USA.
Andre LevchenkoDepartment of Biomedical Engineering and Yale Systems Biology Institute, Yale University, P.O. Box 208260, New Haven, CT, 06520, USA.

Funding

Virtual Electrophysiology LaboratoryDP1HL123271 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI TRAYANOVA, NATALIA A. · 2013 to 2017
$4.0M
REENTRANT ACTIVITY IN CULTURED CARDIAC CELL MONOLAYERSR01HL066239 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI TUNG, LESLIE · 2001 to 2009
$3.1M
Exploration of Arrhythmogenic Triggers and Substrates in Heart FailureR01HL126802 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI EFIMOV, IGOR R, GORELIK, JULIA · 2016 to 2019
$2.8M
Defibrillation Mechanisms in Infarcted HeartsR01HL082729 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI TRAYANOVA, NATALIA A. · 2007 to 2010
$2.1M
Analysis and Engineering of Cell Function with Nanoscale CuesR21EB008562 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI LEVCHENKO, ANDRE · 2008 to 2009
$372k
NHLBI NIH HHS DP1 HL123271NHLBI NIH HHS HL066239NHLBI NIH HHS HL082729NHLBI NIH HHS R01 HL066239NHLBI NIH HHS R01 HL082729NHLBI NIH HHS R01 HL126802NIBIB NIH HHS EB008562NIBIB NIH HHS R21 EB008562
6 · The paper itself

Abstract

Patterns of cellular organization in diverse tissues frequently display a complex geometry and topology tightly related to the tissue function. Progressive disorganization of tissue morphology can lead to pathologic remodeling, necessitating the development of experimental and theoretical methods of analysis of the tolerance of normal tissue function to structural alterations. A systematic way to investigate the relationship of diverse cell organization to tissue function is to engineer two-dimensional cell monolayers replicating key aspects of the in vivo tissue architecture. However, it is still not clear how this can be accomplished on a tissue level scale in a parameterized fashion, allowing for a mathematically precise definition of the model tissue organization and properties down to a cellular scale with a parameter dependent gradual change in model tissue organization. Here, we describe and use a method of designing precisely parameterized, geometrically complex patterns that are then used to control cell alignment and communication of model tissues. We demonstrate direct application of this method to guiding the growth of cardiac cell cultures and developing mathematical models of cell function that correspond to the underlying experimental patterns. Several anisotropic patterned cultures spanning a broad range of multicellular organization, mimicking the cardiac tissue organization of different regions of the heart, were found to be similar to each other and to isotropic cell monolayers in terms of local cell-cell interactions, reflected in similar confluency, morphology and connexin-43 expression. However, in agreement with the model predictions, different anisotropic patterns of cell organization, paralleling in vivo alterations of cardiac tissue morphology, resulted in variable and novel functional responses with important implications for the initiation and maintenance of cardiac arrhythmias. We conclude that variations of tissue geometry and topology can dramatically affect cardiac tissue function even if the constituent cells are themselves similar, and that the proposed method can provide a general strategy to experimentally and computationally investigate when such variation can lead to impaired tissue function.

Indexed as

AlgorithmsAnimalsAnisotropyArrhythmias, CardiacCell CommunicationCells, CulturedComputer SimulationConnexin 43FibronectinsHeartModels, TheoreticalMyocardiumMyocytes, CardiacRatsConnexin 43Fibronectins

Identifiers

PMID26822672
PMCPMC4831076

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.