Evidence map›Paper›PMID 26822117›Full record

ArticleMolecular ecology2016

Mobile genetic elements: in silico, in vitro, in vivo.

Irina R Arkhipova, Phoebe A Rice

Open access · bronzeAbstract read
In one paragraph

Article in Molecular ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 100% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Irina R ArkhipovaJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA, 02543, USA.
Phoebe A RiceDepartment of Biochemistry and Molecular Biology, The University of Chicago, 929 E. 57th Street, Chicago, IL, 60637, USA.
Marine Biological Laboratory · USUniversity of Chicago · US

Funding

Horizontal gene transfer as the source of evolutionary innovation in eukaryotesR01GM111917 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI ARKHIPOVA, IRINA · 2014 to 2025
$4.2M
Structural understanding of Mu transpositionR01GM101989 · NIGMS · UNIVERSITY OF CHICAGO · PI RICE, PHOEBE A · 2013 to 2016
$1.3M
Unexpected parallels between SaPI replication initiators and conserved SCC ORFsR21AI117593 · NIAID · UNIVERSITY OF CHICAGO · PI RICE, PHOEBE A · 2015 to 2016
$435k
NIAID NIH HHS R21 AI117593NIGMS NIH HHS R01 GM101989NIGMS NIH HHS R01 GM111917
6 · The paper itself

Abstract

Mobile genetic elements (MGEs), also called transposable elements (TEs), represent universal components of most genomes and are intimately involved in nearly all aspects of genome organization, function and evolution. However, there is currently a gap between the fast pace of TE discovery in silico, driven by the exponential growth of comparative genomic studies, and a limited number of experimental models amenable to more traditional in vitro and in vivo studies of structural, mechanistic and regulatory properties of diverse MGEs. Experimental and computational scientists came together to bridge this gap at a recent conference, 'Mobile Genetic Elements: in silico, in vitro, in vivo', held at the Marine Biological Laboratory (MBL) in Woods Hole, MA, USA.

Indexed as

DNA Transposable ElementsComputational BiologyCongresses as TopicDatabases, GeneticEndonucleasesGene Expression RegulationGenomicsInteinsIntronsTransposasesDNA Transposable ElementsEndonucleasesTransposasesbioinformaticsgenomicsretrotransposonstransposable elementstransposition

Identifiers

PMID26822117
PMCPMC4769670
OpenAlexW2269750188

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.