ArticlePlant biotechnology journal2016
First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations.
Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- Breeding for next-generation biotic stress-tolerant pigeonpea for sustainable food legume production.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Allelic differences within DNA polymerase delta subunit 1 correlate with geminivirus resistance in diverse plants.G3 (Bethesda, Md.) · 2025Article
- Developing pangenomes for large and complex plant genomes and their representation formats.Journal of advanced research · 2025Review
- Review
- Speed breeding enhances crop resilience and productivity in a changing climate.Molecular breeding : new strategies in plant improvement · 2025Review
- Drought and heat stress: insights into tolerance mechanisms and breeding strategies for pigeonpea improvement.Planta · 2024Review
- Genetic Augmentation of Legume Crops Using Genomic Resources and Genotyping Platforms for Nutritional Food Security.Plants (Basel, Switzerland) · 2022Review
- Genomic resources in plant breeding for sustainable agriculture.Journal of plant physiology · 2021Review
- A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genomics-assisted breeding for pigeonpea improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs.Scientific reports · 2020Article
- An "Axiom Cajanus SNP Array" based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea.BMC genomics · 2019Article
- Speed breeding orphan crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Toward the sequence-based breeding in legumes in the post-genome sequencing era.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Development of sequence-based markers for seed protein content in pigeonpea.Molecular genetics and genomics : MGG · 2019Article
- Development and Application of High-Density AxiomThe plant genome · 2018Article
- Breeding pigeonpea cultivars for intercropping: synthesis and strategies.Breeding science · 2018Review
- Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan).Plant biotechnology journal · 2017Article
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5 authors.
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Abstract
Whole genome re-sequencing (WGRS) was conducted on a panel of 20 Cajanus spp. accessions (crossing parentals of recombinant inbred lines, introgression lines, multiparent advanced generation intercross and nested association mapping population) comprising of two wild species and 18 cultivated species accessions. A total of 791.77 million paired-end reads were generated with an effective mapping depth of ~12X per accession. Analysis of WGRS data provided 5 465 676 genome-wide variations including 4 686 422 SNPs and 779 254 InDels across the accessions. Large structural variations in the form of copy number variations (2598) and presence and absence variations (970) were also identified. Additionally, 2 630 904 accession-specific variations comprising of 2 278 571 SNPs (86.6%), 166 243 deletions (6.3%) and 186 090 insertions (7.1%) were also reported. Identified polymorphic sites in this study provide the first-generation HapMap in Cajanus spp. which will be useful in mapping the genomic regions responsible for important traits.
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