ReviewBMC plant biology2016
Comparison of SNP and CAPS markers application in genetic research in wheat and barley.
Review in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
18 citing papers in PubMed, 53 citations in OpenAlex.
- Genetic diversity analysis and multi-fingerprint map construction of Naematelia aurantialba germplasm resources.Scientific reports · 2025Article
- Two complementary NLRs from wild emmer wheat confer powdery mildew resistance.Nature communications · 2025Article
- Article
- Dissecting the genetic basis of resistance to Soil-borne cereal mosaic virus (SBCMV) in durum wheat by bi-parental mapping and GWAS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Investigation of Imidazolinone Herbicide Resistance Gene with KASP Markers forPlants (Basel, Switzerland) · 2024Article
- Development and Complex Application of Methods for the Identification of Mutations in thePlants (Basel, Switzerland) · 2022Article
- Survey of Drought-Associated TAWRKY2-D1 Gene Diversity in Bread Wheat and Wheat Relatives.Molecular biotechnology · 2021Article
- Discovery and fine mapping of Rph28: a new gene conferring resistance to Puccinia hordei from wild barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Utilization of a Sugarcane100K Single Nucleotide Polymorphisms Microarray-Derived High-Density Genetic Map in Quantitative Trait Loci Mapping and Function Role Prediction of Genes Related to Chlorophyll Content in Sugarcane.Frontiers in plant science · 2021Article
- Development of PCR-based markers and whole-genome selection model for anthracnose resistance in white lupin (Lupinus albus L.).Journal of applied genetics · 2020Article
- A new SNP genotyping technology Target SNP-seq and its application in genetic analysis of cucumber varieties.Scientific reports · 2020Article
- Development of gene-based molecular markers tagging low alkaloid pauper locus in white lupin (Lupinus albus L.).Journal of applied genetics · 2019Article
- Article
- High Resolution Mapping ofFrontiers in plant science · 2019Article
- Protein Disulfide Isomerase (PDI1-1) differential expression and modification in Mexican malting barley cultivars.PloS one · 2018Article
- Solar Radiation-Associated Adaptive SNP Genetic Differentiation in Wild Emmer Wheat,Frontiers in plant science · 2017Article
- Expression Level of theFrontiers in plant science · 2016Article
- Is a non-synonymous SNP in the HvAACT1 coding region associated with acidic soil tolerance in barley?Genetics and molecular biologyArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundBarley and bread wheat show large differences in frequencies of Single Nucleotide Polymorphism (SNP) as determined from genome-wide studies. These frequencies have been estimated as 2.4-3 times higher in the entire barley genome than within each diploid genomes of wheat (A, B or D). However, barley SNPs within individual genes occur significantly more frequently than quoted. Differences between wheat and barley are based on the origin and evolutionary history of the species. Bread wheat contains rarer SNPs due to the double genetic 'bottle-neck' created by natural hybridisation and spontaneous polyploidisation. Furthermore, wheat has the lowest level of useful SNP-derived markers while barley is estimated to have the highest level of polymorphism.
resultsDifferent strategies are required for the development of suitable molecular markers in these cereal species. For example, SNP markers based on high-throughput technology (Infinium or KASP) are very effective and useful in both barley and bread wheat. In contrast, Cleaved Amplified Polymorphic Sequences (CAPS) are more widely and successfully employed in small-scale experiments with highly polymorphic genetic regions containing multiple SNPs in barley, but not in wheat. However, preliminary 'in silico' search databases for assessing the potential value of SNPs have yet to be developed.
conclusionsThis mini-review summarises results supporting the development of different strategies for the application of effective SNP and CAPS markers in wheat and barley.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.