Evidence map›Paper›PMID 26821087›Full record

ArticleJournal of virological methods2016

Cross-subtype detection of HIV-1 using reverse transcription and recombinase polymerase amplification.

Lorraine Lillis, Dara A Lehman, Joshua B Siverson, Julie Weis, Jason Cantera, Mathew Parker, Olaf Piepenburg, Julie Overbaugh, David S Boyle

Abstract read
In one paragraph

Article in Journal of virological methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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  13. Rapid Detection ofFrontiers in cellular and infection microbiology · 2022
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lorraine LillisPATH, 2201 Westlake Ave Suite 200, Seattle, WA 98121, USA.
Dara A LehmanFred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA.
Joshua B SiversonPATH, 2201 Westlake Ave Suite 200, Seattle, WA 98121, USA.
Julie WeisFred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA.
Jason CanteraPATH, 2201 Westlake Ave Suite 200, Seattle, WA 98121, USA.
Mathew ParkerTwistDx Limited, Minerva Building, Babraham Research Campus, Babraham, Cambridge CB22, UK.
Olaf PiepenburgTwistDx Limited, Minerva Building, Babraham Research Campus, Babraham, Cambridge CB22, UK.
Julie OverbaughFred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA.
David S BoylePATH, 2201 Westlake Ave Suite 200, Seattle, WA 98121, USA. Electronic address: dboyle@path.org.

Funding

Recombinase Polymerase Amplification for Point-of-Care Diagnosis of Infant HIV-1R01AI097038 · NIAID · PATH · PI BOYLE, DAVID SCOTT · 2011 to 2013
$1.2M
NIAID NIH HHS R01 AI097038NIAID NIH HHS R01AI097038
6 · The paper itself

Abstract

A low complexity diagnostic test that rapidly and reliably detects HIV infection in infants at the point of care could facilitate early treatment, improving outcomes. However, many infant HIV diagnostics can only be performed in laboratory settings. Recombinase polymerase amplification (RPA) is an isothermal amplification technology that can rapidly amplify proviral DNA from multiple subtypes of HIV-1 in under twenty minutes without complex equipment. In this study we added reverse transcription (RT) to RPA to allow detection of both HIV-1 RNA and DNA. We show that this RT-RPA HIV-1 assay has a limit of detection of 10-30 copies of an exact sequence matched DNA or RNA, respectively. In addition, at 100 copies of RNA or DNA, the assay detected 171 of 175 (97.7%) sequence variants that represent all the major subtypes and recombinant forms of HIV-1 Groups M and O. This data suggests that the application of RT-RPA for the combined detection of HIV-1 viral RNA and proviral DNA may prove a highly sensitive tool for rapid and accurate diagnosis of infant HIV.

Indexed as

HIV-1HIV InfectionsHumansInfantMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesRecombinasesReverse TranscriptionSensitivity and SpecificityViral ProteinsRecombinasesViral ProteinsDiagnosticHuman immunodeficiency virusInfant HIVPoint of careReverse transcription recombinase polymerase amplification

Identifiers

PMID26821087
PMCPMC4767662

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.