Evidence map›Paper›PMID 26819409›Full record

ArticleNucleic acids research2016

The Kub5-Hera/RPRD1B interactome: a novel role in preserving genetic stability by regulating DNA mismatch repair.

Praveen L Patidar, Edward A Motea, Farjana J Fattah, Yunyun Zhou, Julio C Morales, Yang Xie, Harold R Garner, David A Boothman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
  5. Article
  6. Article
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  8. Article
  9. PROTACs in gastrointestinal cancers.Molecular therapy oncolytics · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Kub5-HeraClinical cancer research : an official journal of the American Association for Cancer Research · 2018
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Praveen L PatidarDepartments of Pharmacology and Radiation Oncology, Program in Cell Stress and Cancer Nanomedicine, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Edward A MoteaDepartments of Pharmacology and Radiation Oncology, Program in Cell Stress and Cancer Nanomedicine, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Farjana J FattahDepartments of Pharmacology and Radiation Oncology, Program in Cell Stress and Cancer Nanomedicine, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yunyun ZhouQuantitative Biomedical Center, Department of Clinical Science, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, USA.
Julio C MoralesDepartment of Neurosurgery, University of Oklahoma Heath Science Center, Oklahoma City, OK, USA.
Yang XieQuantitative Biomedical Center, Department of Clinical Science, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, USA.
Harold R GarnerEdward Via College of Osteopathic Medicine and the MITTE Office, Virginia Tech, Blacksburg, VA, USA.
David A BoothmanDepartments of Pharmacology and Radiation Oncology, Program in Cell Stress and Cancer Nanomedicine, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA David.Boothman@UTSouthwestern.edu.
The University of Texas Southwestern Medical Center · USEdward Via College of Osteopathic Medicine · USUniversity of Oklahoma · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
Cancer Biology Training GrantT32CA124334 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 2007 to 2021
$5.3M
RPRD1B/Kub5/Hera, an RNA Pol II determinant that controls PARPi & IR sensitivityR01CA210489 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MOTEA, EDWARD AYSON · 2016 to 2020
$1.8M
Ku70 Binding Protein-5 (KUB5), a Novel Factor in Nonhomologous End JoiningR01CA139217 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI BOOTHMAN, DAVID A · 2010 to 2014
$1.7M
NCI NIH HHS 5P30CA142543NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA139217NCI NIH HHS R01 CA139217-05S1NCI NIH HHS R01 CA210489NCI NIH HHS T32CA124334-06
6 · The paper itself

Abstract

Ku70-binding protein 5 (Kub5)-Hera (K-H)/RPRD1B maintains genetic integrity by concomitantly minimizing persistent R-loops and promoting repair of DNA double strand breaks (DSBs). We used tandem affinity purification-mass spectrometry, co-immunoprecipitation and gel-filtration chromatography to define higher-order protein complexes containing K-H scaffolding protein to gain insight into its cellular functions. We confirmed known protein partners (Ku70, RNA Pol II, p15RS) and discovered several novel associated proteins that function in RNA metabolism (Topoisomerase 1 and RNA helicases), DNA repair/replication processes (PARP1, MSH2, Ku, DNA-PKcs, MCM proteins, PCNA and DNA Pol δ) and in protein metabolic processes, including translation. Notably, this approach directed us to investigate an unpredicted involvement of K-H in DNA mismatch repair (MMR) where K-H depletion led to concomitant MMR deficiency and compromised global microsatellite stability. Mechanistically, MMR deficiency in K-H-depleted cells was a consequence of reduced stability of the core MMR proteins (MLH1 and PMS2) caused by elevated basal caspase-dependent proteolysis. Pan-caspase inhibitor treatment restored MMR protein loss. These findings represent a novel mechanism to acquire MMR deficiency/microsatellite alterations. A significant proportion of colon, endometrial and ovarian cancers exhibit k-h expression/copy number loss and may have severe mutator phenotypes with enhanced malignancies that are currently overlooked based on sporadic MSI+ screening.

Indexed as

Genomic InstabilityAntigens, NuclearCell Cycle ProteinsDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA Mismatch RepairDNA Topoisomerases, Type IHeLa CellsHumansKu AutoantigenMultiprotein ComplexesNeoplasm ProteinsNeoplasmsRepressor ProteinsRNA HelicasesRNA Polymerase IIAntigens, NuclearCell Cycle ProteinsDNA-Binding ProteinsDNA Topoisomerases, Type IKu AutoantigenMultiprotein ComplexesNeoplasm ProteinsRepressor ProteinsRNA HelicasesRNA Polymerase IIRPRD1A protein, humanRPRD1B protein, humanXrcc6 protein, human

Identifiers

PMID26819409
PMCPMC4770225
OpenAlexW2273348391

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.