Evidence map›Paper›PMID 26819372›Full record

ArticleOncotarget2016

PDIP46 (DNA polymerase δ interacting protein 46) is an activating factor for human DNA polymerase δ.

Xiaoxiao Wang, Sufang Zhang, Rong Zheng, Fu Yue, Szu Hua Sharon Lin, Amal A Rahmeh, Ernest Y C Lee, Zhongtao Zhang, Marietta Y W T Lee

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 17 citations in OpenAlex.

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  12. Deciphering GRINA/Lifeguard1: Nuclear Location, CaInternational journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaoxiao WangDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Sufang ZhangDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Rong ZhengDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Fu YueDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Szu Hua Sharon LinDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Amal A RahmehDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Ernest Y C LeeDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Zhongtao ZhangDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
Marietta Y W T LeeDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, USA.
New York Medical College · US

Funding

Modification of DNA Polymerase Delta by a Novel Mechanism During Replication StreR01ES014737 · NIEHS · NEW YORK MEDICAL COLLEGE · PI LEE, MARIETTA Y., ZHANG, ZHONGTAO · 2008 to 2017
$3.5M
NIEHS NIH HHS ES014737NIEHS NIH HHS R01 ES014737NIGMS NIH HHS GM031793
6 · The paper itself

Abstract

PDIP46 (SKAR, POLDIP3) was discovered through its interaction with the p50 subunit of human DNA polymerase δ (Pol δ). Its functions in DNA replication are unknown. PDIP46 associates with Pol δ in cell extracts both by immunochemical and protein separation methods, as well as by ChIP analyses. PDIP46 also interacts with PCNA via multiple copies of a novel PCNA binding motif, the APIMs (AlkB homologue-2 PCNA-Interacting Motif). Sites for both p50 and PCNA binding were mapped to the N-terminal region containing the APIMs. Functional assays for the effects of PDIP46 on Pol δ activity on singly primed ssM13 DNA templates revealed that it is a novel and potent activator of Pol δ. The effects of PDIP46 on Pol δ in primer extension, strand displacement and synthesis through simple hairpin structures reveal a mechanism where PDIP46 facilitates Pol δ4 synthesis through regions of secondary structure on complex templates. In addition, evidence was obtained that PDIP46 is also capable of exerting its effects by a direct interaction with Pol δ, independent of PCNA. Mutation of the Pol δ and PCNA binding region resulted in a loss of PDIP46 functions. These studies support the view that PDIP46 is a novel accessory protein for Pol δ that is involved in cellular DNA replication. This raises the possibility that altered expression of PDIP46 or its mutation may affect Pol δ functions in vivo, and thereby be a nexus for altered genomic stability.

Indexed as

Cell Line, TumorDNA Polymerase IIIDNA ReplicationEnzyme ActivationHEK293 CellsHeLa CellsHumansNuclear ProteinsProtein BindingRNA-Binding ProteinsDNA Polymerase IIINuclear ProteinsPOLDIP3 protein, humanRNA-Binding ProteinsDNA polymerase δDNA replicationPDIP46POLDIP3SKAR

Identifiers

PMID26819372
PMCPMC4868757
OpenAlexW2266387545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.