Evidence map›Paper›PMID 26818854›Full record

ArticleFEMS yeast research2016

Replacement of the initial steps of ethanol metabolism in Saccharomyces cerevisiae by ATP-independent acetylating acetaldehyde dehydrogenase.

Barbara U Kozak, Harmen M van Rossum, Matthijs S Niemeijer, Marlous van Dijk, Kirsten Benjamin, Liang Wu, Jean-Marc G Daran, Jack T Pronk, Antonius J A van Maris

Open access · bronzeAbstract read
In one paragraph

Article in FEMS yeast research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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  9. Microbial cell factories · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Barbara U KozakDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands.
Harmen M van RossumDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands.
Matthijs S NiemeijerDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands.
Marlous van DijkDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands.
Kirsten BenjaminAmyris Inc, 5885 Hollis Street, Ste. 100, Emeryville, CA94608, USA.
Liang WuDSM Biotechnology Center, Alexander Fleminglaan 1, 2613 AX Delft, the Netherlands.
Jean-Marc G DaranDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands.
Jack T PronkDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands.
Antonius J A van MarisDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, the Netherlands a.j.a.vanmaris@tudelft.nl.
Delft University of Technology · NLAmyris (United States) · USDSM (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Saccharomyces cerevisiae ethanol dissimilation is initiated by its oxidation and activation to cytosolic acetyl-CoA. The associated consumption of ATP strongly limits yields of biomass and acetyl-CoA-derived products. Here, we explore the implementation of an ATP-independent pathway for acetyl-CoA synthesis from ethanol that, in theory, enables biomass yield on ethanol that is up to 40% higher. To this end, all native yeast acetaldehyde dehydrogenases (ALDs) were replaced by heterologous acetylating acetaldehyde dehydrogenase (A-ALD). Engineered Ald(-) strains expressing different A-ALDs did not immediately grow on ethanol, but serial transfer in ethanol-grown batch cultures yielded growth rates of up to 70% of the wild-type value. Mutations in ACS1 were identified in all independently evolved strains and deletion of ACS1 enabled slow growth of non-evolved Ald(-) A-ALD strains on ethanol. Acquired mutations in A-ALD genes improved affinity-Vmax/Km for acetaldehyde. One of five evolved strains showed a significant 5% increase of its biomass yield in ethanol-limited chemostat cultures. Increased production of acetaldehyde and other by-products was identified as possible cause for lower than theoretically predicted biomass yields. This study proves that the native yeast pathway for conversion of ethanol to acetyl-CoA can be replaced by an engineered pathway with the potential to improve biomass and product yields.

Indexed as

Metabolic EngineeringAdenosine TriphosphateAldehyde OxidoreductasesCulture MediaEthanolMetabolic Networks and PathwaysRecombinant ProteinsSaccharomyces cerevisiaeacetaldehyde dehydrogenase (acylating)Adenosine TriphosphateAldehyde OxidoreductasesCulture MediaEthanolRecombinant Proteinsacetyl-CoAenergeticsevolutionary engineeringintracellular metabolitesprecursor supplyyeast

Identifiers

PMID26818854
PMCPMC5815134
OpenAlexW2291235940

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.