Evidence map›Paper›PMID 26818076›Full record

ArticleG3 (Bethesda, Md.)2016

Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans.

Justin E Anderson, Thomas J Y Kono, Robert M Stupar, Michael B Kantar, Peter L Morrell

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  5. Evaluating the Response ofPlants (Basel, Switzerland) · 2023
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  7. Article
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  10. Review
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  12. Review
  13. Review
  14. Plant adaptation to climate change - Where are we?Journal of systematics and evolution · 2020
    Article
  15. Genetic Architecture of Early Vigor Traits in Wild Soybean.International journal of molecular sciences · 2020
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Justin E AndersonDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Thomas J Y KonoDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Robert M StuparDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Michael B KantarDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108 Biodiversity Research Centre and Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada kant0063@umn.edu pmorrell@umn.edu.
Peter L MorrellDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108 kant0063@umn.edu pmorrell@umn.edu.
University of Minnesota · USUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural populations across a species range demonstrate population structure owing to neutral processes such as localized origins of mutations and migration limitations. Selection also acts on a subset of loci, contributing to local adaptation. An understanding of the genetic basis of adaptation to local environmental conditions is a fundamental goal in basic biological research. When applied to crop wild relatives, this same research provides the opportunity to identify adaptive genetic variation that may be used to breed for crops better adapted to novel or changing environments. The present study explores an ex situ conservation collection, the USDA germplasm collection, genotyped at 32,416 SNPs to identify population structure and test for associations with bioclimatic and biophysical variables in Glycine soja, the wild progenitor of Glycine max (soybean). Candidate loci were detected that putatively contribute to adaptation to abiotic stresses. The identification of potentially adaptive variants in this ex situ collection may permit a more targeted use of germplasm collections.

Indexed as

Adaptation, BiologicalEnvironmentAllelesChromosome MappingCrops, AgriculturalGenetic LinkageGenetics, PopulationGenome-Wide Association StudyGlycine maxLinkage DisequilibriumPolymorphism, Single NucleotideStress, Physiologicalcrop wild relativegermplasm collectionsGlycine sojalandscape genomicspopulation structuresoybean

Identifiers

PMID26818076
PMCPMC4825654
OpenAlexW2302750813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.