Evidence map›Paper›PMID 26818072›Full record

ArticleG3 (Bethesda, Md.)2016

A Plasmid Set for Efficient Bacterial Artificial Chromosome (BAC) Transgenesis in Zebrafish.

Fernando Fuentes, Eric Reynolds, Stephen W Lewellis, Gayatri Venkiteswaran, Holger Knaut

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Fernando FuentesDevelopmental Genetics Program, Skirball Institute of Biomolecular Medicine, New York University Langone Medical Center, New York 10016.
Eric ReynoldsDevelopmental Genetics Program, Skirball Institute of Biomolecular Medicine, New York University Langone Medical Center, New York 10016.
Stephen W LewellisDevelopmental Genetics Program, Skirball Institute of Biomolecular Medicine, New York University Langone Medical Center, New York 10016.
Gayatri VenkiteswaranDevelopmental Genetics Program, Skirball Institute of Biomolecular Medicine, New York University Langone Medical Center, New York 10016.
Holger KnautDevelopmental Genetics Program, Skirball Institute of Biomolecular Medicine, New York University Langone Medical Center, New York 10016 Kimmel Center for Stem Cell Biology, New York University Langone Medical Center, New York 10016 holger.knaut@med.nyu.edu.

Funding

TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
Molecular Regulation of Trigeminal Sensory Ganglia DevelopmentR01NS069839 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KNAUT, HOLGER · 2011 to 2016
$2.2M
Transposon-mediated BAC Transgenesis.R03HD070866 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KNAUT, HOLGER · 2012 to 2014
$249k
NICHD NIH HHS R03 HD070866NICHD NIH HHS T32 HD007520NINDS NIH HHS R01 NS069839
6 · The paper itself

Abstract

Transgenesis of large DNA constructs is essential for gene function analysis. Recently, Tol2 transposase-mediated transgenesis has emerged as a powerful tool to insert bacterial artificial chromosome (BAC) DNA constructs into the genome of zebrafish. For efficient transgenesis, the genomic DNA piece in the BAC construct needs to be flanked by Tol2 transposon sites, and the constructs should contain a transgenesis marker for easy identification of transgenic animals. We report a set of plasmids that contain targeting cassettes that allow the insertion of Tol2 sites and different transgenesis markers into BACs. Using BACs containing these targeting cassettes, we show that transgenesis is as efficient as iTol2, that preselecting for expression of the transgenesis marker increases the transgenesis rate, and that BAC transgenics faithfully recapitulate the endogenous gene expression patterns and allow for the estimation of the endogenous gene expression levels.

Indexed as

Chromosomes, Artificial, BacterialGene Transfer TechniquesTransgenesAnimalsAnimals, Genetically ModifiedEmbryo, NonmammalianGene ExpressionGene OrderGene TargetingGenetic VectorsPlasmidsZebrafishBAC transgenesisgene expressionzebrafish

Identifiers

PMID26818072
PMCPMC4825653

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.