Evidence map›Paper›PMID 26817579›Full record

ArticleMicrobiologyOpen2016

Bacterial diversity in the surface sediments of the hypoxic zone near the Changjiang Estuary and in the East China Sea.

Qi Ye, Ying Wu, Zhuoyi Zhu, Xiaona Wang, Zhongqiao Li, Jing Zhang

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 97 citations in OpenAlex.

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  14. Soil Bacterial Community Structure in Turfy Swamp and Its Response to Highway Disturbance.International journal of environmental research and public health · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Qi YeState Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
Ying WuState Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
Zhuoyi ZhuState Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
Xiaona WangState Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
Zhongqiao LiState Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
Jing ZhangState Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
East China Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Changjiang (Yangtze River) Estuary has experienced severe hypoxia since the 1950s. In order to investigate potential ecological functions of key microorganisms in relation to hypoxia, we performed 16S rRNA-based Illumina Miseq sequencing to explore the bacterial diversity in the surface sediments of the hypoxic zone near the Changjiang Estuary and in the East China Sea (ECS). The results showed that numerous Proteobacteria-affiliated sequences in the sediments of the inner continental shelf were related to both sulfate-reducing and sulfur-oxidizing bacteria, suggesting an active sulfur cycle in this area. Many sequences retrieved from the hypoxic zone were also related to Planctomycetes from two marine upwelling systems, which may be involved in the initial breakdown of sulfated heteropolysaccharides. Bacteroidetes, which is expected to degrade high-molecular-weight organic matter, was abundant in all the studied stations except for station A8, which was the deepest and possessed the largest grain size. In addition, dissolved organic carbon, water depth, percentage ratio of clay to silt, salinity, and sedimentary grain size were environmental effectors that shaped the sedimentary microbial community structure. Our results showed that putative Gammaproteobacteria-affiliated sulfur-oxidizing bacteria may not only detoxify hydrogen sulfide produced by sulfate-reducing prokaryotes, but also serve as the primary producers in the marine sediments. Specific groups of aerobic Bacteroidetes and Planctomycetes participated in degrading organic matter, which might contribute to the oxygen depletion in the hypoxic zones.

Indexed as

BiodiversityEnvironmental MicrobiologyEstuariesBacteriaChinaCluster AnalysisDNA Barcoding, TaxonomicEnvironmentHigh-Throughput Nucleotide SequencingOxidation-ReductionPhylogenyRNA, Ribosomal, 16SSulfatesSulfidesRNA, Ribosomal, 16SSulfatesSulfidesBacteriaChangjiang EstuaryhypoxiaMiseq Illumina sequencingsediment

Identifiers

PMID26817579
PMCPMC4831476
OpenAlexW2297506163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.