Evidence map›Paper›PMID 26816394›Full record

ArticleIET systems biology2016

Model reduction and parameter estimation of non-linear dynamical biochemical reaction networks.

Xiaodian Sun, Mario Medvedovic

Abstract read
In one paragraph

Article in IET systems biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Xiaodian SunDepartment of Environmental Health, Laboratory for Statistical Genomics and Systems Biology, University of Cincinnati College of Medicine, 3223 Eden Ave. ML56, Cincinnati, OH 45267-0056, USA. sunxd@uc.edu.
Mario MedvedovicDepartment of Environmental Health, Laboratory for Statistical Genomics and Systems Biology, University of Cincinnati College of Medicine, 3223 Eden Ave. ML56, Cincinnati, OH 45267-0056, USA.

Funding

Data Coordination and Integration Center for LINCS-BD2KU54HL127624 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MA'AYAN, AVI, SCHURER, STEPHAN C · 2014 to 2019
$23.5M
NHGRI NIH HHS U54HG008230NHLBI NIH HHS U54 HL127624
6 · The paper itself

Abstract

Parameter estimation for high dimension complex dynamic system is a hot topic. However, the current statistical model and inference approach is known as a large p small n problem. How to reduce the dimension of the dynamic model and improve the accuracy of estimation is more important. To address this question, the authors take some known parameters and structure of system as priori knowledge and incorporate it into dynamic model. At the same time, they decompose the whole dynamic model into subset network modules, based on different modules, and then they apply different estimation approaches. This technique is called Rao-Blackwellised particle filters decomposition methods. To evaluate the performance of this method, the authors apply it to synthetic data generated from repressilator model and experimental data of the JAK-STAT pathway, but this method can be easily extended to large-scale cases.

Indexed as

Models, BiologicalAlgorithmsJanus KinasesMetabolic Networks and PathwaysNonlinear DynamicsSignal TransductionSTAT Transcription FactorsSystems BiologyJanus KinasesSTAT Transcription Factors

Identifiers

PMID26816394
PMCPMC4786080

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.