Evidence map›Paper›PMID 26815240›Full record

ArticleMolecular and biochemical parasitology2015

Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.

Whitney Bullard, Laura Cliffe, Pengcheng Wang, Yinsheng Wang, Robert Sabatini

Abstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Whitney BullardFrom the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, United States.
Laura CliffeFrom the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, United States.
Pengcheng WangEnvironmental Toxicology Graduate Program, United States.
Yinsheng WangEnvironmental Toxicology Graduate Program, United States; Department of Chemistry, University of California, Riverside, CA, United States.
Robert SabatiniFrom the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, United States. Electronic address: rsabatini@bmb.uga.edu.

Funding

TR&D1: Stem Cell and Induced Pluripotent Stem Cell Resources (Pages 116-134)P41GM103490 · NIGMS · UNIVERSITY OF GEORGIA · PI PIERCE, J. MICHAEL · 2012 to 2018
$13.7M
Training in Tropical and Emerging Global Diseases - SupplementT32AI060546 · NIAID · UNIVERSITY OF GEORGIA (UGA) · PI Silvia N Moreno, Vasant Muralidharan · 2004 to 2026
$5.1M
Regulation of RNA polymerase II transcription in trypanosomatidsR01AI109108 · NIAID · UNIVERSITY OF GEORGIA · PI SABATINI, ROBERT S · 2014 to 2022
$3.7M
NIAID NIH HHS R01 AI109108NIAID NIH HHS R01AI109108NIAID NIH HHS T32 AI060546NIGMS NIH HHS P41 GM103490NIGMS NIH HHS P41GM103490
6 · The paper itself

Abstract

Telomeric DNA of trypanosomatids possesses a modified thymine base, called base J, that is synthesized in a two-step process; the base is hydroxylated by a thymidine hydroxylase forming hydroxymethyluracil (hmU) and a glucose moiety is then attached by the J-associated glucosyltransferase (JGT). To examine the importance of JGT in modifiying specific thymine in DNA, we used a Leishmania episome system to demonstrate that the telomeric repeat (GGGTTA) stimulates J synthesis in vivo while mutant telomeric sequences (GGGTTT, GGGATT, and GGGAAA) do not. Utilizing an in vitro GT assay we find that JGT can glycosylate hmU within any sequence with no significant change in Km or kcat, even mutant telomeric sequences that are unable to be J-modified in vivo. The data suggests that JGT possesses no DNA sequence specificity in vitro, lending support to the hypothesis that the specificity of base J synthesis is not at the level of the JGT reaction.

Indexed as

DNA, ProtozoanGlucosyltransferasesKineticsLeishmaniaPentoxylProtozoan ProteinsTelomereThymine5-hydroxymethyluracilDNA, ProtozoanGlucosyltransferasesPentoxylProtozoan ProteinsThymineBase JEpigeneticGlucosyltransferaseRNA polymerase II transcriptionTrypanosomatid

Identifiers

PMID26815240
PMCPMC4889113

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.