Evidence map›Paper›PMID 26814702›Full record

ArticleeLife2016

Epigenetic regulation of hematopoiesis by DNA methylation.

Aniket V Gore, Brett Athans, James R Iben, Kristin Johnson, Valya Russanova, Daniel Castranova, Van N Pham, Matthew G Butler, Lisa Williams-Simons, James T Nichols and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. mCells · 2025
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Haematopoiesis in Zebrafish (Danio Rerio).Frontiers in immunology · 2022
    Review
  15. Review
  16. Review
  17. Developmental exposure to PbChemosphere · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Aniket V GoreDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Brett AthansDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
James R IbenProgram in Developmental Endocrinology and Genetics, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Kristin JohnsonDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Valya RussanovaDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Daniel CastranovaDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Van N PhamDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Matthew G ButlerDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Lisa Williams-SimonsDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
James T NicholsInstitute of Neuroscience, University of Oregon, Eugene, United States.
Erica BrescianiOncogenesis and Development Section, National Human Genome Research Institute, National Institutes of Health, Bethesda, United States.
Bejamin FeldmanDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
Charles B KimmelInstitute of Neuroscience, University of Oregon, Eugene, United States.
Paul P LiuOncogenesis and Development Section, National Human Genome Research Institute, National Institutes of Health, Bethesda, United States.
Brant M WeinsteinDivision of Developmental Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.
National Institutes of Health · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of Oregon · USNational Human Genome Research Institute · US

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 1987 to 2017
$28.8M
Molecular Genomics Sequencing Core FacilityZICHD008958 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MAHADEVAN, VIVEK · 2016 to 2025
$19.0M
Specification And Patterning of Developing Blood VesselsZIAHD001011 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI WEINSTEIN, BRANT · 2009 to 2025
$18.4M
GENETIC ANALYSIS OF ZEBRAFISH EMBRYO DEVELOPMENTZIAHG000102 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI LIU, PAUL · 2009 to 2025
$17.1M
CRANIOFACIAL MORPHOGENESIS IN ZEBRAFISHR01DE013834 · NIDCR · UNIVERSITY OF OREGON · PI KIMMEL, CHARLES B · 2000 to 2014
$6.9M
Gene Function, Expression and Regulation in ZebrafishZICHD008921 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI FELDMAN, BENJAMIN · 2012 to 2023
$6.1M
Cell Fate Choices in the SkeletonK99DE024190 · NIDCR · UNIVERSITY OF OREGON · PI NICHOLS, JAMES TUCKER · 2014 to 2015
$296k
Intramural NIH HHS ZIA HD001011NICHD NIH HHS P01 HD022486NIDCR NIH HHS K99 DE024190NIDCR NIH HHS K99DE24190NIDCR NIH HHS R01 DE013834
6 · The paper itself

Abstract

During embryonic development, cell type-specific transcription factors promote cell identities, while epigenetic modifications are thought to contribute to maintain these cell fates. Our understanding of how genetic and epigenetic modes of regulation work together to establish and maintain cellular identity is still limited, however. Here, we show that DNA methyltransferase 3bb.1 (dnmt3bb.1) is essential for maintenance of hematopoietic stem and progenitor cell (HSPC) fate as part of an early Notch-runx1-cmyb HSPC specification pathway in the zebrafish. Dnmt3bb.1 is expressed in HSPC downstream from Notch1 and runx1, and loss of Dnmt3bb.1 activity leads to reduced cmyb locus methylation, reduced cmyb expression, and gradual reduction in HSPCs. Ectopic overexpression of dnmt3bb.1 in non-hematopoietic cells is sufficient to methylate the cmyb locus, promote cmyb expression, and promote hematopoietic development. Our results reveal an epigenetic mechanism supporting the maintenance of hematopoietic cell fate via DNA methylation-mediated perdurance of a key transcription factor in HSPCs.

Indexed as

DNA MethylationEpigenesis, GeneticGene Expression RegulationAnimalsGene ExpressionGenetic LociHematopoiesisMethyltransferasesZebrafishMethyltransferasesCell Fate maintenancedevelopmental biologyDNA methylationEpigeneticsstem cellszebrafish

Identifiers

PMID26814702
PMCPMC4744183
OpenAlexW2291003808

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.