Evidence map›Paper›PMID 26814130›Full record

ArticleThe Journal of biological chemistry2016

The Tumor-suppressive Small GTPase DiRas1 Binds the Noncanonical Guanine Nucleotide Exchange Factor SmgGDS and Antagonizes SmgGDS Interactions with Oncogenic Small GTPases.

Carmen Bergom, Andrew D Hauser, Amy Rymaszewski, Patrick Gonyo, Jeremy W Prokop, Benjamin C Jennings, Alexis J Lawton, Anne Frei, Ellen L Lorimer, Irene Aguilera-Barrantes and 4 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

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  12. GEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2018
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  17. Generalized myoclonic epilepsy with photosensitivity in juvenile dogs caused by a defective DIRAS family GTPase 1.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. Methylation ofClinical epigenetics · 2017
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Carmen BergomFrom the Cancer Center, the Departments of Radiation Oncology, cbergom@mcw.edu.
Andrew D HauserFrom the Cancer Center, the Departments of Radiation Oncology, Pharmacology and Toxicology, and the Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, New York 10016, and.
Amy RymaszewskiFrom the Cancer Center, Pharmacology and Toxicology, and.
Patrick GonyoFrom the Cancer Center, Pharmacology and Toxicology, and.
Jeremy W Prokopthe Human and Molecular Genetics Center, and.
Benjamin C Jenningsthe Department of Chemistry.
Alexis J Lawtonthe Department of Chemistry, Biochemistry Undergraduate Program, and.
Anne FreiFrom the Cancer Center, the Departments of Radiation Oncology.
Ellen L LorimerFrom the Cancer Center, Pharmacology and Toxicology, and.
Irene Aguilera-BarrantesPathology.
Alexander C MackinnonFrom the Cancer Center, Pathology.
Kathleen Noonthe Mass Spectroscopy Facility for Proteomics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Carol A Fierkethe Department of Chemistry, Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109.
Carol L WilliamsFrom the Cancer Center, Pharmacology and Toxicology, and.
Institute of Pharmacology · CZCenter for Human Genetics · USDivision of Undergraduate Education · USMedical College of Wisconsin · USNew York University · USUniversity of Michigan–Ann Arbor · US

Funding

STRUCTURE/FUNCTION OF ZINC METALLOPROTEINSR01GM040602 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FIERKE, CAROL A · 1993 to 2017
$6.0M
Institutional Career Development CoreKL2TR001438 · NCATS · MEDICAL COLLEGE OF WISCONSIN · PI WIDLANSKY, MICHAEL E · 2015 to 2024
$2.9M
Regulation of Rap1 Prenylation and Trafficking in Breast CancerR01CA188871 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI WILLIAMS, CAROL LUCILLE · 2015 to 2019
$1.7M
Clinical and Translational Science AwardKL2TR000056 · NCATS · MEDICAL COLLEGE OF WISCONSIN · PI SHAKER, REZA NONE · 2012 to 2015
$609k
Using a Sequence-to-Structure-to-Function Approach to Functionally Characterize Protein Coding Missense Mutations in the Human and Rat GenomesK01ES025435 · NIEHS · MICHIGAN STATE UNIVERSITY · PI PROKOP, JEREMY WILLIAM · 2014 to 2018
$489k
Regulation and trafficking of prenylated proteinsF32GM112317 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JENNINGS, BENJAMIN C · 2014 to 2015
$109k
NCATS NIH HHS 8KL2TR000056NCATS NIH HHS KL2 TR000056NCATS NIH HHS KL2 TR001438NCI NIH HHS R01 CA188871NCI NIH HHS R01CA188871NIEHS NIH HHS K01 ES025435NIGMS NIH HHS F32 GM112317NIGMS NIH HHS F32GM112317NIGMS NIH HHS R01 GM040602NIGMS NIH HHS R01GM040602
6 · The paper itself

Abstract

The small GTPase DiRas1 has tumor-suppressive activities, unlike the oncogenic properties more common to small GTPases such as K-Ras and RhoA. Although DiRas1 has been found to be a tumor suppressor in gliomas and esophageal squamous cell carcinomas, the mechanisms by which it inhibits malignant phenotypes have not been fully determined. In this study, we demonstrate that DiRas1 binds to SmgGDS, a protein that promotes the activation of several oncogenic GTPases. In silico docking studies predict that DiRas1 binds to SmgGDS in a manner similar to other small GTPases. SmgGDS is a guanine nucleotide exchange factor for RhoA, but we report here that SmgGDS does not mediate GDP/GTP exchange on DiRas1. Intriguingly, DiRas1 acts similarly to a dominant-negative small GTPase, binding to SmgGDS and inhibiting SmgGDS binding to other small GTPases, including K-Ras4B, RhoA, and Rap1A. DiRas1 is expressed in normal breast tissue, but its expression is decreased in most breast cancers, similar to its family member DiRas3 (ARHI). DiRas1 inhibits RhoA- and SmgGDS-mediated NF-κB transcriptional activity in HEK293T cells. We also report that DiRas1 suppresses basal NF-κB activation in breast cancer and glioblastoma cell lines. Taken together, our data support a model in which DiRas1 expression inhibits malignant features of cancers in part by nonproductively binding to SmgGDS and inhibiting the binding of other small GTPases to SmgGDS.

Indexed as

Amino Acid SequenceBreast NeoplasmsCarcinoma, Ductal, BreastGTP PhosphohydrolasesGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateHEK293 CellsHumansMCF-7 CellsMolecular Docking SimulationNF-kappa BProtein BindingProtein Structure, SecondaryProto-Oncogene Proteins p21(ras)rhoA GTP-Binding ProteinDIRAS1 protein, humanGTP PhosphohydrolasesGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateKRAS protein, humanNF-kappa BProto-Oncogene Proteins p21(ras)RAP1GDS1 protein, humanrhoA GTP-Binding ProteinRHOA protein, humanTumor Suppressor Proteinsbreast cancerDi-Ras1glioblastomaGTPase Kras (KRAS)NF-kappaB (NF-KB)Rap1GDS1Ras homolog gene family, member A (RhoA)Ras-related protein 1 (Rap1)RigSmgGDS

Identifiers

PMID26814130
PMCPMC4813585
OpenAlexW2285655593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.