Evidence map›Paper›PMID 26813108›Full record

ArticleNature communications2016

Systematic identification of genes with a cancer-testis expression pattern in 19 cancer types.

Cheng Wang, Yayun Gu, Kai Zhang, Kaipeng Xie, Meng Zhu, Ningbin Dai, Yue Jiang, Xuejiang Guo, Mingxi Liu, Juncheng Dai and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 167 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 2 countries.

Cheng WangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Yayun GuState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Kai ZhangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Kaipeng XieState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Meng ZhuState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Ningbin DaiState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Yue JiangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Xuejiang GuoState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.ORCID http://orcid.org/0000-0002-0475-5705
Mingxi LiuState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Juncheng DaiState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Linxiang WuDepartment of Bioinformatics, School of Basic Medical Sciences, Nanjing Medical University, Nanjing 210029, China.
Guangfu JinState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Hongxia MaState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Tao JiangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Rong YinJiangsu Key Laboratory of Molecular and Translational Cancer Research, Collaborative Innovation Center For Cancer Personalized Medicine, Nanjing Medical University Affiliated Cancer Hospital, Nanjing 210009, China.
Yankai XiaDepartment of Molecular Cell Biology and Toxicology, Jiangsu Key Lab of Cancer Biomarkers, Prevention &Treatment, Collaborative Innovation Center For Cancer Personalized Medicine, School of Public Health, Nanjing Medical University, Nanjing 210029, China.
Li LiuDigestive Endoscopy Center, the First Affiliated Hospital of Nanjing Medical University, Nanjing 210029, China.
Shouyu WangDepartment of Molecular Cell Biology and Toxicology, Jiangsu Key Lab of Cancer Biomarkers, Prevention &Treatment, Collaborative Innovation Center For Cancer Personalized Medicine, School of Public Health, Nanjing Medical University, Nanjing 210029, China.
Bin ShenState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Ran HuoState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Qianghu WangDepartment of Bioinformatics, School of Basic Medical Sciences, Nanjing Medical University, Nanjing 210029, China.
Lin XuJiangsu Key Laboratory of Molecular and Translational Cancer Research, Collaborative Innovation Center For Cancer Personalized Medicine, Nanjing Medical University Affiliated Cancer Hospital, Nanjing 210009, China.
Liuqing YangDepartment of Molecular and Cellular Oncology, Cancer Biology Program, Center for RNA Interference and Non-Coding RNAs, the University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.
Xingxu HuangSchool of Life Science and Technology, Shanghai Tech University, 100 Haike Road, Pudong New Area, Shanghai 201210, China.
Hongbing ShenState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Jiahao ShaState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Zhibin HuState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Nanjing Medical University · CNJiangsu Cancer Hospital · CNJiangsu Province Hospital · CNShanghaiTech University · CNThe University of Texas MD Anderson Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer-testis (CT) genes represent the similarity between the processes of spermatogenesis and tumorigenesis. It is possible that their selective expression pattern can help identify driver genes in cancer. In this study, we integrate transcriptomics data from multiple databases and systematically identify 876 new CT genes in 19 cancer types. We explore their relationship with testis-specific regulatory elements. We propose that extremely highly expressed CT genes (EECTGs) are potential drivers activated through epigenetic mechanisms. We find mutually exclusive associations between EECTGs and somatic mutations in mutated genes, such as PIK3CA in breast cancer. We also provide evidence that promoter demethylation and close non-coding RNAs (namely, CT-ncRNAs) may be two mechanisms to reactivate EECTG gene expression. We show that the meiosis-related EECTG (MEIOB) and its nearby CT-ncRNA have a role in tumorigenesis in lung adenocarcinoma. Our findings provide methods for identifying epigenetic-driver genes of cancer, which could serve as targets of future cancer therapies.

Indexed as

Gene Expression Regulation, NeoplasticMultigene FamilyAntigens, NeoplasmCell Line, TumorGene Expression ProfilingHumansMutationNeoplasmsPromoter Regions, GeneticAntigens, Neoplasm

Identifiers

PMID26813108
PMCPMC4737856
OpenAlexW2263101679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.