Evidence map›Paper›PMID 26812153›Full record

ArticlePloS one2016

Deciphering Parameter Sensitivity in the BvgAS Signal Transduction.

Tarunendu Mapder, Srijeeta Talukder, Sudip Chattopadhyay, Suman K Banik

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tarunendu MapderDepartment of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, Howrah 711103, India.
Srijeeta TalukderDepartment of Chemistry, University of Calcutta, 92 A P C Road, Kolkata 700 009, India.
Sudip ChattopadhyayDepartment of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, Howrah 711103, India.
Suman K BanikDepartment of Chemistry, Bose Institute, 93/1 A P C Road, Kolkata 700 009, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To understand the switching of different phenotypic phases of Bordetella pertussis, we propose an optimized mathematical framework for signal transduction through BvgAS two-component system. The response of the network output to the sensory input has been demonstrated in steady state. An analysis in terms of local sensitivity amplification characterizes the nature of the molecular switch. The sensitivity analysis of the model parameters within the framework of various correlation coefficients helps to decipher the contribution of the modular structure in signal propagation. Once classified, the model parameters are tuned to generate the behavior of some novel strains using simulated annealing, a stochastic optimization technique.

Indexed as

Signal TransductionBacterial ProteinsBordetella pertussisModels, TheoreticalOperonPhosphorylationTranscription, GeneticBacterial Proteins

Identifiers

PMID26812153
PMCPMC4727886

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.