Evidence map›Paper›PMID 26811339›Full record

ArticleThe Journal of biological chemistry2016

PqsBC, a Condensing Enzyme in the Biosynthesis of the Pseudomonas aeruginosa Quinolone Signal: CRYSTAL STRUCTURE, INHIBITION, AND REACTION MECHANISM.

Steffen Lorenz Drees, Chan Li, Fajar Prasetya, Muhammad Saleem, Ingrid Dreveny, Paul Williams, Ulrich Hennecke, Jonas Emsley, Susanne Fetzner

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Relationship between Pyochelin andInternational journal of molecular sciences · 2024
    Review
  5. Article
  6. Alkyl-quinolone-dependent quorum sensing controls prophage-mediated autolysis inFrontiers in cellular and infection microbiology · 2023
    Article
  7. Novel Antibiofilm Inhibitor Ginkgetin as an Antibacterial Synergist againstInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Quantitative proteomic reveals gallium maltolate induces an iron-limited stress response and reduced quorum-sensing in Pseudomonas aeruginosa.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Potential of theFrontiers in cellular and infection microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Steffen Lorenz DreesFrom the Institute for Molecular Microbiology and Biotechnology and.
Chan LiSchools of Pharmacy and.
Fajar PrasetyaSchools of Pharmacy and.
Muhammad SaleemSchools of Pharmacy and.
Ingrid DrevenySchools of Pharmacy and.
Paul WilliamsLife Sciences, University of Nottingham, Nottingham NG7 2RD, United Kingdom.
Ulrich HenneckeOrganic Chemistry Institute, University of Münster, D-48149 Münster, Germany and the Centre for Biomolecular Sciences.
Jonas EmsleySchools of Pharmacy and jonas.emsley@nottingham.ac.uk.
Susanne FetznerFrom the Institute for Molecular Microbiology and Biotechnology and fetzner@uni-muenster.de.
University of Nottingham · GBUniversity of Münster · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas aeruginosaproduces a number of alkylquinolone-type secondary metabolites best known for their antimicrobial effects and involvement in cell-cell communication. In the alkylquinolone biosynthetic pathway, the β-ketoacyl-(acyl carrier protein) synthase III (FabH)-like enzyme PqsBC catalyzes the condensation of octanoyl-coenzyme A and 2-aminobenzoylacetate (2-ABA) to form the signal molecule 2-heptyl-4(1H)-quinolone. PqsBC, a potential drug target, is unique for its heterodimeric arrangement and an active site different from that of canonical FabH-like enzymes. Considering the sequence dissimilarity between the subunits, a key question was how the two subunits are organized with respect to the active site. In this study, the PqsBC structure was determined to a 2 Å resolution, revealing that PqsB and PqsC have a pseudo-2-fold symmetry that unexpectedly mimics the FabH homodimer. PqsC has an active site composed of Cys-129 and His-269, and the surrounding active site cleft is hydrophobic in character and approximately twice the volume of related FabH enzymes that may be a requirement to accommodate the aromatic substrate 2-ABA. From physiological and kinetic studies, we identified 2-aminoacetophenone as a pathway-inherent competitive inhibitor of PqsBC, whose fluorescence properties could be used forin vitrobinding studies. In a time-resolved setup, we demonstrated that the catalytic histidine is not involved in acyl-enzyme formation, but contributes to an acylation-dependent increase in affinity for the second substrate 2-ABA. Introduction of Asn into the PqsC active site led to significant activity toward the desamino substrate analog benzoylacetate, suggesting that the substrate 2-ABA itself supplies the asparagine-equivalent amino function that assists in catalysis.

Indexed as

3-Oxoacyl-(Acyl-Carrier-Protein) Synthase4-QuinolonesAcetophenonesAcyl Coenzyme AAmino Acid SequenceAminobenzoatesAnti-Bacterial AgentsBacterial ProteinsBinding, CompetitiveBinding SitesBiocatalysisCatalytic DomainCrystallography, X-RayEnzyme InhibitorsEscherichia coliKinetics2-aminoacetophenone2-heptyl-4-quinolone3-ketoacyl-acyl carrier protein synthase III3-Oxoacyl-(Acyl-Carrier-Protein) Synthase4-QuinolonesAcetophenonesAcyl Coenzyme AAminobenzoatesAnti-Bacterial AgentsBacterial ProteinsEnzyme InhibitorsLigandsoctanoyl-coenzyme AProtein SubunitsRecombinant Proteins2-alkyl-4(1H)-quinolonesbiosynthesiscondensing enzymecrystal structureFabHPseudomonas aeruginosa (P. aeruginosa)Pseudomonas quinolone signalquorum sensingsecondary metabolism

Identifiers

PMID26811339
PMCPMC4807248
OpenAlexW2291587324

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.