Evidence map›Paper›PMID 26809736›Full record

ArticleBMC infectious diseases2016

Killer-cell Immunoglobulin-like Receptor (KIR) gene profiles modify HIV disease course, not HIV acquisition in South African women.

V Naranbhai, D de Assis Rosa, L Werner, R Moodley, H Hong, A Kharsany, K Mlisana, S Sibeko, N Garrett, D Chopera and 7 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 5 countries.

V NaranbhaiCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. vivekn@well.ox.ac.uk.
D de Assis RosaNational Institute of Communicable Diseases, Sandringham, South Africa. debradeassisrosa@gmail.com.
L WernerCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. liesiew@gmail.com.
R MoodleyHIV Pathogenesis Programme, University of KwaZulu-Natal, Durban, South Africa. ramony111@gmail.com.
H HongDivision of Virology, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa. heatherh@nicd.ac.za.
A KharsanyCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. KHARSANY@ukzn.ac.za.
K MlisanaCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. mlisanak@gmail.com.
S SibekoCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. singeziwe@yahoo.com.
N GarrettCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. Nigel.Garrett@caprisa.org.
D ChoperaUniversity of Cape Town, Cape Town, South Africa. denis.chopera@gmail.com.
W H CarrHIV Pathogenesis Programme, University of KwaZulu-Natal, Durban, South Africa. wcarr@mec.cuny.edu.
Q Abdool KarimCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. Quarraisha.AbdoolKarim@caprisa.org.
A V S HillWellcome Trust Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, UK. adrian.hill@ndm.ox.ac.uk.
S S Abdool KarimCentre for the AIDS Programme of Research in South Africa (CAPRISA), University of KwaZulu-Natal, Durban, South Africa. Salim.AbdoolKarim@caprisa.org.
M AltfeldRagon Institute of MGH, MIT and Harvard University, Boston, USA. marcus.altfeld@hpi.uni-hamburg.de.
C M GrayNational Institute of Communicable Diseases, Sandringham, South Africa. clive.gray@uct.ac.za.
T Ndung'uHIV Pathogenesis Programme, University of KwaZulu-Natal, Durban, South Africa. ndungu@ukzn.ac.za.
Centre for the AIDS Programme of Research in South Africa · ZACentre for Human Genetics · GBNational Health Laboratory Service · ZALeibniz Institute of Virology (LIV) · DEMax Planck Institute for Infection Biology · DERagon Institute of MGH, MIT and Harvard · USUniversity of Cape Town · ZAUniversity of KwaZulu-Natal · ZAUniversity of the Witwatersrand · ZA

Funding

The Viral Set Point in HIV-1 Subtype C InfectionU19AI051794 · NIAID · UNIVERSITY OF KWAZULU-NATAL · PI ABDOOL KARIM, SALIM S · 2002 to 2007
$22.5M
TUBERCULOSIS SUPPLEMENTD43TW000231 · FIC · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ABDOOL KARIM, QUARRAISHA · 1993 to 2014
$13.1M
AIDS-Restrictive Innate Immune MechanismsK01TW007793 · FIC · MASSACHUSETTS GENERAL HOSPITAL · PI CARR, WILLIAM H · 2008 to 2011
$489k
FIC NIH HHS D43 TW000231FIC NIH HHS K01 TW007793FIC NIH HHS K01-TW007793Howard Hughes Medical InstituteNIAID NIH HHS AI51794NIAID NIH HHS U19 AI051794Wellcome TrustWellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

backgroundKiller-cell Immunoglobulin-like Receptors (KIR) interact with Human Leukocyte Antigen (HLA) to modify natural killer- and T-cell function. KIR are implicated in HIV acquisition by small studies that have not been widely replicated. A role for KIR in HIV disease progression is more widely replicated and supported by functional studies.

methodsTo assess the role of KIR and KIR ligands in HIV acquisition and disease course, we studied at-risk women in South Africa between 2004-2010. Logistic regression was used for nested case-control analysis of 154 women who acquired vs. 155 who did not acquire HIV, despite high exposure. Linear mixed-effects models were used for cohort analysis of 139 women followed prospectively for a median of 54 months (IQR 31-69) until 2014.

resultsNeither KIR repertoires nor HLA alleles were associated with HIV acquisition. However, KIR haplotype BB was associated with lower viral loads (-0.44 log10 copies/ml; SE = 0.18; p = 0.03) and higher CD4+ T-cell counts (+80 cells/μl; SE = 42; p = 0.04). This was largely explained by the protective effect of KIR2DL2/KIR2DS2 on the B haplotype and reciprocal detrimental effect of KIR2DL3 on the A haplotype.

conclusionsAlthough neither KIR nor HLA appear to have a role in HIV acquisition, our data are consistent with involvement of KIR2DL2 in HIV control. Additional studies to replicate these findings are indicated.

Indexed as

AdultAllelesCD4-Positive T-LymphocytesCohort StudiesDisease ProgressionFemaleHaplotypesHIV InfectionsHLA-C AntigensHumansKiller Cells, NaturalProspective StudiesReceptors, KIRSouth AfricaViral LoadHLA-C AntigensReceptors, KIR

Identifiers

PMID26809736
PMCPMC4727384
OpenAlexW2261195376

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.