Evidence map›Paper›PMID 26808559›Full record

ArticlePloS one2016

Cloning and Expression of Phytase appA Gene from Shigella sp. CD2 in Pichia pastoris and Comparison of Properties with Recombinant Enzyme Expressed in E. coli.

Moushree Pal Roy, Deepika Mazumdar, Subhabrata Dutta, Shyama Prasad Saha, Shilpi Ghosh

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Inactivation ofFoods (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Cloning ofIranian journal of microbiology · 2021
    Article
  6. New Bacterial Phytase through Metagenomic Prospection.Molecules (Basel, Switzerland) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Moushree Pal RoyDepartment of Biotechnology, University of North Bengal, Siliguri, India.
Deepika MazumdarDepartment of Biotechnology, University of North Bengal, Siliguri, India.
Subhabrata DuttaDepartment of Biotechnology, University of North Bengal, Siliguri, India.
Shyama Prasad SahaDepartment of Biotechnology, University of North Bengal, Siliguri, India.
Shilpi GhoshDepartment of Biotechnology, University of North Bengal, Siliguri, India.
North Bengal University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The phytase gene appAS was isolated from Shigella sp. CD2 genomic library. The 3.8 kb DNA fragment contained 1299 bp open reading frame encoding 432 amino acid protein (AppAS) with 22 amino acid signal peptide at N-terminal and three sites of N-glycosylation. AppAS contained the active site RHGXRXP and HDTN sequence motifs, which are conserved among histidine acid phosphatases. It showed maximum identity with phytase AppA of Escherichia coli and Citrobacter braakii. The appAS was expressed in Pichia pastoris and E. coli to produce recombinant phytase rAppAP and rAppAE, respectively. Purified glycosylated rAppAP and nonglycosylated rAppAE had specific activity of 967 and 2982 U mg(-1), respectively. Both had pH optima of 5.5 and temperature optima of 60°C. Compared with rAppAE, rAppAP was 13 and 17% less active at pH 3.5 and 7.5 and 11 and 18% less active at temperature 37 and 50°C, respectively; however, it was more active at higher incubation temperatures. Thermotolerance of rAppAP was 33% greater at 60°C and 24% greater at 70°C, when compared with rAppAE. Both the recombinant enzymes showed high specificity to phytate and resistance to trypsin. To our knowledge, this is the first report on cloning and expression of phytase from Shigella sp.

Indexed as

Genes, Bacterial6-PhytaseAcid PhosphataseAmino Acid SequenceBacterial ProteinsBase SequenceCitrobacterCloning, MolecularEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGene Expression Regulation, FungalGlycosylationMolecular Sequence DataPhylogenyPhytic Acid6-PhytaseAcid PhosphataseappA protein, E coliBacterial ProteinsEscherichia coli ProteinsPhytic AcidRecombinant Fusion ProteinsTrypsin

Identifiers

PMID26808559
PMCPMC4726635
OpenAlexW2267856242

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.