Evidence map›Paper›PMID 26808192›Full record

ArticlePloS one2016

Molecular Characterization of the N-Acetylglucosamine Catabolic Genes in Candida africana, a Natural N-Acetylglucosamine Kinase (HXK1) Mutant.

Maria Rosa Felice, Megha Gulati, Letterio Giuffrè, Domenico Giosa, Luca Marco Di Bella, Giuseppe Criseo, Clarissa J Nobile, Orazio Romeo, Fabio Scordino

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Hyphal Growth inMicrobiology spectrum · 2023
    Article
  4. Journal of fungi (Basel, Switzerland) · 2019
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Maria Rosa FeliceDepartment of Biological and Environmental Sciences, University of Messina, Messina, Italy.
Megha GulatiDepartment of Molecular and Cell Biology, University of California Merced, Merced, California, United States of America.
Letterio GiuffrèDepartment of Biological and Environmental Sciences, University of Messina, Messina, Italy.
Domenico GiosaDepartment of Biological and Environmental Sciences, University of Messina, Messina, Italy.
Luca Marco Di BellaDepartment of Biological and Environmental Sciences, University of Messina, Messina, Italy.
Giuseppe CriseoDepartment of Biological and Environmental Sciences, University of Messina, Messina, Italy.
Clarissa J NobileDepartment of Molecular and Cell Biology, University of California Merced, Merced, California, United States of America.
Orazio RomeoDepartment of Biological and Environmental Sciences, University of Messina, Messina, Italy.
Fabio ScordinoScientific Institute for Research, Hospitalization and Health Care (IRCCS)-Centro Neurolesi "Bonino-Pulejo", Messina, Italy.
University of Messina · ITUniversity of California, Merced · USCentro Neurolesi Bonino Pulejo · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn this study we report the genetic characterization, including expression analysis, of the genes involved in the uptake (NGT1) and catabolism (HXK1/NAG5, DAC1/NAG2, NAG1) of the aminosugar N-acetylglucosamine (GlcNAc) in Candida africana, a pathogenic biovariant of Candida albicans that is naturally unable to assimilate the GlcNAc.

resultsDNA sequence analysis of these genes revealed a number of characteristic nucleotide substitutions including a unique and distinctive guanine insertion that shifts the reading frame and generates a premature stop codon (TGA) 154 bp downstream of the ATG start codon of the HXK1 gene encoding the GlcNAc-kinase, a key enzyme of the GlcNAc catabolic pathway. However, all examined genes produced transcripts even though different levels of expression were observed among the Candida isolates examined. In particular, we found an HXK1-idependent relationship of the NGT1 gene and a considerable influence of the GlcNAc-kinase functionality on the transcription of the DAC1 and NAG1 genes. Additional phenotypic analysis revealed that C. africana isolates are hyperfilamentous in the first 24-48h of growth on filament-inducing media and revert to the yeast morphological form after 72h of incubation on these media.

conclusionsOur results show that C. africana is a natural HXK1 mutant, displaying a number of phenotypic characteristics distinct from typical C. albicans isolates.

Indexed as

Genes, FungalMutationAcetylglucosamineCandidaGene Expression Regulation, EnzymologicGene Expression Regulation, FungalPhosphotransferases (Alcohol Group Acceptor)AcetylglucosamineN-acetylglucosamine kinasePhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID26808192
PMCPMC4726466
OpenAlexW2259890513

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.