Evidence map›Paper›PMID 26806561›Full record

ArticleScientific reports2016

Panel-based NGS Reveals Novel Pathogenic Mutations in Autosomal Recessive Retinitis Pigmentosa.

Raquel Perez-Carro, Marta Corton, Iker Sánchez-Navarro, Olga Zurita, Noelia Sanchez-Bolivar, Rocío Sánchez-Alcudia, Stefan H Lelieveld, Elena Aller, Miguel Angel Lopez-Martinez, Ma Isabel López-Molina and 7 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

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  14. Next-Generation Sequencing Applications for Inherited Retinal Diseases.International journal of molecular sciences · 2021
    Review
  15. Genotype-Phenotype Correlations inJournal of clinical medicine · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Raquel Perez-CarroDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Marta CortonDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Iker Sánchez-NavarroDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Olga ZuritaDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Noelia Sanchez-BolivarDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Rocío Sánchez-AlcudiaDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Stefan H LelieveldDepartment of Human Genetics, Radboud university medical center, 6525 GA Nijmegen, The Netherlands.
Elena AllerCentre for Biomedical Network Research on Rare Diseases (CIBERER), ISCIII, Madrid, Spain.
Miguel Angel Lopez-MartinezDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Ma Isabel López-MolinaDepartment of Ophthalmology, IIS-Fundacion Jimenez Diaz University Hospital, Madrid, Spain.
Patricia Fernandez-San JoseDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Fiona Blanco-KellyDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Rosa Riveiro-AlvarezDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Christian GilissenDepartment of Human Genetics, Radboud university medical center, 6525 GA Nijmegen, The Netherlands.
Jose M MillanCentre for Biomedical Network Research on Rare Diseases (CIBERER), ISCIII, Madrid, Spain.
Almudena Avila-FernandezDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Carmen AyusoDepartment of Genetics, Instituto de Investigacion Sanitaria-Fundacion Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Centre for Biomedical Network Research on Rare Diseases · ESHospital Universitario Fundación Jiménez Díaz · ESInstituto de Salud Carlos III · ESRadboud University Nijmegen · NLUniversidad Autónoma de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinitis pigmentosa (RP) is a group of inherited progressive retinal dystrophies (RD) characterized by photoreceptor degeneration. RP is highly heterogeneous both clinically and genetically, which complicates the identification of causative genes and mutations. Targeted next-generation sequencing (NGS) has been demonstrated to be an effective strategy for the detection of mutations in RP. In our study, an in-house gene panel comprising 75 known RP genes was used to analyze a cohort of 47 unrelated Spanish families pre-classified as autosomal recessive or isolated RP. Disease-causing mutations were found in 27 out of 47 cases achieving a mutation detection rate of 57.4%. In total, 33 pathogenic mutations were identified, 20 of which were novel mutations (60.6%). Furthermore, not only single nucleotide variations but also copy-number variations, including three large deletions in the USH2A and EYS genes, were identified. Finally seven out of 27 families, displaying mutations in the ABCA4, RP1, RP2 and USH2A genes, could be genetically or clinically reclassified. These results demonstrate the potential of our panel-based NGS strategy in RP diagnosis.

Indexed as

ATP-Binding Cassette TransportersDNA Copy Number VariationsDNA Mutational AnalysisExonsExtracellular Matrix ProteinsEye ProteinsFemaleGTP-Binding ProteinsHigh-Throughput Nucleotide SequencingHumansIntracellular Signaling Peptides and ProteinsMaleMembrane ProteinsMicrotubule-Associated ProteinsMutationPedigreeABCA4 protein, humanATP-Binding Cassette TransportersExtracellular Matrix ProteinsEye ProteinsGTP-Binding ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMicrotubule-Associated ProteinsRP1 protein, humanRP2 protein, humanUSH2A protein, human

Identifiers

PMID26806561
PMCPMC4726392
OpenAlexW2282010902

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.