Evidence map›Paper›PMID 26804060›Full record

ArticleYeast (Chichester, England)2016

Tryptophan biosynthesis is important for resistance to replicative stress in Saccharomyces cerevisiae.

Stephen K Godin, Alison G Lee, Jared M Baird, Benjamin W Herken, Kara A Bernstein

Open access · greenAbstract read
In one paragraph

Article in Yeast (Chichester, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Synthetic and systems biotechnology · 2025
    Article
  2. A comprehensive review and comparison of L-tryptophan biosynthesis inFrontiers in bioengineering and biotechnology · 2023
    Review
  3. RNA-Seq Based Transcriptome Analysis ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Stephen K GodinDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, PA, USA.
Alison G LeeDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, PA, USA.
Jared M BairdDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, PA, USA.
Benjamin W HerkenDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, PA, USA.
Kara A BernsteinDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, PA, USA.
UPMC Hillman Cancer Center · USUniversity of Pittsburgh · US

Funding

Undergraduate Summer Research Supplement for 5R01GM104007-07: Characterization of a Meiotic Crossover Surveillance SystemR01GM104007 · NIGMS · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI YANOWITZ, JUDITH L · 2013 to 2021
$2.6M
Replication fork dynamics and repair by Rad51 paralogues after DNA alkylationR01ES024872 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BERNSTEIN, KARA A · 2015 to 2019
$2.4M
COELOMOCYTES IN C.ELEGANS--CELL FATE DETERMINATIONF32HD008715 · NICHD · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI YANOWITZ, JUDITH L · 2000 to 2002
$112k
NICHD NIH HHS F32 HD008715NIEHS NIH HHS R01 ES024872NIGMS NIH HHS R01 GM104007
6 · The paper itself

Abstract

Acute tryptophan depletion is used to induce low levels of serotonin in the brain. This method has been widely used in psychiatric studies to evaluate the effect of low levels of serotonin, and is generally considered a safe and reversible procedure. Here we use the budding yeast Saccharomyces cerevisiae to study the effects of tryptophan depletion on growth rate upon exposure to DNA-damaging agents. Surprisingly, we found that budding yeast undergoing tryptophan depletion were more sensitive to DNA-damaging agents such as methyl methanesulphonate (MMS) and hydroxyurea (HU). We found that this defect was independent of several DNA repair pathways, such as homologous recombination, base excision repair and translesion synthesis, and that this damage sensitivity was not due to impaired S-phase signalling. Upon further analysis, we found that the DNA-damage sensitivity of tryptophan depletion was likely due to impaired protein synthesis. These studies describe an important source of variance in budding yeast when using tryptophan as an auxotrophic marker, particularly on studies focusing on DNA repair, and suggest that further testing of the effect of tryptophan depletion on DNA repair in mammalian cells is warranted. Copyright © 2016 John Wiley & Sons, Ltd.

Indexed as

Cell DivisionDNA DamageDNA, FungalDNA RepairGene Expression Regulation, FungalSaccharomyces cerevisiaeStress, PhysiologicalTryptophanDNA, FungalTryptophanDNA repairDNA replicationProtein synthesisSaccharomycesTryptophan

Identifiers

PMID26804060
PMCPMC4856547
OpenAlexW2262113683

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.