Evidence map›Paper›PMID 26802029›Full record

ArticleOncotarget2016

Imprinting defects at human 14q32 locus alters gene expression and is associated with the pathobiology of osteosarcoma.

Jingmin Shu, Lihua Li, Anne E Sarver, Emily A Pope, Jyotika Varshney, Venugopal Thayanithy, Logan Spector, David A Largaespada, Clifford J Steer, Subbaya Subramanian

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Biological Sample Collection to Advance Research and Treatment: A Fight Osteosarcoma Through European Research and Euro Ewing Consortium Statement.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Guideline
  2. Review
  3. Article
  4. Article
  5. YBX1-interacting small RNAs andJournal of bone oncology · 2023
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jingmin ShuMasonic Cancer Research Center, University of Minnesota, Minneapolis, MN, USA.
Lihua LiDepartment of Surgery, University of Minnesota, Minneapolis, MN, USA.
Anne E SarverDepartment of Surgery, University of Minnesota, Minneapolis, MN, USA.
Emily A PopeDepartment of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, MN, USA.
Jyotika VarshneyDepartment of Surgery, University of Minnesota, Minneapolis, MN, USA.
Venugopal ThayanithyDepartment of Surgery, University of Minnesota, Minneapolis, MN, USA.
Logan SpectorMasonic Cancer Research Center, University of Minnesota, Minneapolis, MN, USA.
David A LargaespadaMasonic Cancer Research Center, University of Minnesota, Minneapolis, MN, USA.
Clifford J SteerMasonic Cancer Research Center, University of Minnesota, Minneapolis, MN, USA.
Subbaya SubramanianMasonic Cancer Research Center, University of Minnesota, Minneapolis, MN, USA.
University of Minnesota · USCancer Research Center · US

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Douglas Yee · 1998 to 2026
$100.4M
TRAINING GRANT IN DIABETES, ENDOCRINOLOGY, &METABOLISMT32DK007203 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI LISA Senye CHOW, Douglas G Mashek · 1986 to 2026
$4.3M
Sleeping Beauty for uncovering cancer genes in miceR01CA113636 · NCI · UNIVERSITY OF MINNESOTA · PI LARGAESPADA, DAVID ANDREW · 2006 to 2016
$2.5M
NCI NIH HHS P30 CA077598NCI NIH HHS R01 CA113636NIDDK NIH HHS T32 DK007203
6 · The paper itself

Abstract

Osteosarcoma is the most common primary bone malignancy affecting children and adolescents. Although several genetic predisposing conditions have been associated with osteosarcoma, our understanding of its pathobiology is rather limited. Here we show that, first, an imprinting defect at human 14q32-locus is highly prevalent (87%) and specifically associated with osteosarcoma patients < 30 years of age. Second, the average demethylation at differentially methylated regions (DMRs) in the 14q32-locus varied significantly compared to genome-wide demethylation. Third, the 14q32-locus was enriched in both H3K4-me3 and H3K27-me3 histone modifications that affected expression of all imprinted genes and miRNAs in this region. Fourth, imprinting defects at 14q32 - DMRs are present in triad DNA samples from affected children and their biological parents. Finally, imprinting defects at 14q32-DMRs were also observed at higher frequencies in an Rb1/Trp53 mutation-induced osteosarcoma mouse model. Further analysis of normal and tumor tissues from a Sleeping Beauty mouse model of spontaneous osteosarcoma supported the notion that these imprinting defects may be a key factor in osteosarcoma pathobiology. In conclusion, we demonstrate that imprinting defects at the 14q32 locus significantly alter gene expression, may contribute to the pathogenesis of osteosarcoma, and could be predictive of survival outcomes.

Indexed as

Gene Expression Regulation, NeoplasticGenomic ImprintingAdultAnimalsApoptosisBiomarkers, TumorBone NeoplasmsCell ProliferationChromosomes, Human, Pair 14FemaleHumansLymphatic MetastasisMaleMiceOsteosarcomaPrognosisBiomarkers, Tumor14q32-locusDNA methylationhistone modificationsimprintingosteosarcoma

Identifiers

PMID26802029
PMCPMC5008286
OpenAlexW2264450313

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.