Evidence map›Paper›PMID 26801645›Full record

ArticleG3 (Bethesda, Md.)2016

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.

C Alisha Quandt, Yanming Di, Justin Elser, Pankaj Jaiswal, Joseph W Spatafora

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Two novel endophyticFungal systematics and evolution · 2023
    Article
  2. Review
  3. Comprehensive Review ofPathogens (Basel, Switzerland) · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The mycoparasitic fungusEvolutionary applications · 2018
    Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

C Alisha QuandtDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331 alishaq@umich.edu.ORCID http://orcid.org/0000-0003-0260-8995
Yanming DiDepartment of Statistics, Oregon State University, Corvallis, Oregon, 97331.
Justin ElserDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331.
Pankaj JaiswalDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331.
Joseph W SpataforaDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331.
Oregon State University · US

Funding

NB Regression and HOA Inference for RNA-Seq Gene Expression AnalysisR01GM104977 · NIGMS · OREGON STATE UNIVERSITY · PI DI, YANMING · 2012 to 2014
$553k
NIGMS NIH HHS R01 GM104977NIGMS NIH HHS R01GM104977
6 · The paper itself

Abstract

The ability of a fungus to infect novel hosts is dependent on changes in gene content, expression, or regulation. Examining gene expression under simulated host conditions can explore which genes may contribute to host jumping. Insect pathogenesis is the inferred ancestral character state for species of Tolypocladium, however several species are parasites of truffles, including Tolypocladium ophioglossoides. To identify potentially crucial genes in this interkingdom host switch, T. ophioglossoides was grown on four media conditions: media containing the inner and outer portions of its natural host (truffles of Elaphomyces), cuticles from an ancestral host (beetle), and a rich medium (Yeast Malt). Through high-throughput RNASeq of mRNA from these conditions, many differentially expressed genes were identified in the experiment. These included PTH11-related G-protein-coupled receptors (GPCRs) hypothesized to be involved in host recognition, and also found to be upregulated in insect pathogens. A divergent chitinase with a signal peptide was also found to be highly upregulated on media containing truffle tissue, suggesting an exogenous degradative activity in the presence of the truffle host. The adhesin gene, Mad1, was highly expressed on truffle media as well. A BiNGO analysis of overrepresented GO terms from genes expressed during each growth condition found that genes involved in redox reactions and transmembrane transport were the most overrepresented during T. ophioglossoides growth on truffle media, suggesting their importance in growth on fungal tissue as compared to other hosts and environments. Genes involved in secondary metabolism were most highly expressed during growth on insect tissue, suggesting that their products may not be necessary during parasitism of Elaphomyces. This study provides clues into understanding genetic mechanisms underlying the transition from insect to truffle parasitism.

Indexed as

Gene Expression Regulation, FungalGenes, FungalAscomycotaChitinasesCluster AnalysisComputational BiologyGene Expression ProfilingGene OntologyPhylogenyReceptors, G-Protein-CoupledSecondary MetabolismChitinasesReceptors, G-Protein-CoupledadhesinchitinaseElaphomycesPTH11 GPCRRNA-Seq

Identifiers

PMID26801645
PMCPMC4777134
OpenAlexW2313184434

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.