Evidence map›Paper›PMID 26801623›Full record

ArticleBMC genomics2016

Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae.

Jose Díaz-Riquelme, Vladimir Zhurov, Cristina Rioja, Ignacio Pérez-Moreno, Rafael Torres-Pérez, Jérôme Grimplet, Pablo Carbonell-Bejerano, Sabina Bajda, Thomas Van Leeuwen, José Miguel Martínez-Zapater and 2 more

Abstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
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  5. Article
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  9. Article
  10. Plant Defenses AgainstPlants (Basel, Switzerland) · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Distinct Signatures of Host Defense Suppression by Plant-Feeding Mites.International journal of molecular sciences · 2018
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jose Díaz-RiquelmeDepartment of Biology, The University of Western Ontario, 1151 Richmond Street, London, ON, N6A5B7, Canada. josediazriquelme@gmail.com.
Vladimir ZhurovDepartment of Biology, The University of Western Ontario, 1151 Richmond Street, London, ON, N6A5B7, Canada. vzhurov2@uwo.ca.
Cristina RiojaDepartment of Biology, The University of Western Ontario, 1151 Richmond Street, London, ON, N6A5B7, Canada. criojall@uwo.ca.
Ignacio Pérez-MorenoUniversity of La Rioja, 26006, Logroño, Spain. ignacio.perez@unirioja.es.
Rafael Torres-PérezInstituto de Ciencias de la Vid y del Vino, 26006, Logroño, Spain. rafael.torres@icvv.es.
Jérôme GrimpletInstituto de Ciencias de la Vid y del Vino, 26006, Logroño, Spain. jerome.grimplet@icvv.es.
Pablo Carbonell-BejeranoInstituto de Ciencias de la Vid y del Vino, 26006, Logroño, Spain. pablo.carbonell@icvv.es.
Sabina BajdaDepartment of Crop Protection, Ghent University, B-9000, Ghent, Belgium. S.A.Bajda@uva.nl.
Thomas Van LeeuwenDepartment of Crop Protection, Ghent University, B-9000, Ghent, Belgium. Thomas.VanLeeuwen@UGent.be.
José Miguel Martínez-ZapaterInstituto de Ciencias de la Vid y del Vino, 26006, Logroño, Spain. zapater@icvv.es.
Miodrag GrbicDepartment of Biology, The University of Western Ontario, 1151 Richmond Street, London, ON, N6A5B7, Canada. mgrbic@uwo.ca.
Vojislava GrbicDepartment of Biology, The University of Western Ontario, 1151 Richmond Street, London, ON, N6A5B7, Canada. vgrbic@uwo.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. Even though mites can feed on many plant species, local mite populations form host races that do not perform equally well on all potential hosts. An acquisition of the ability to evade plant defenses is fundamental for mite's ability to use a particular plant as a host. Thus, understanding the interactions between the plant and mites with different host adaptation status allows the identification of functional plant defenses and ways mites can evolve to avoid them.

resultsThe grapevine genome-wide transcriptional responses to spider mite strains that are non-adapted and adapted to grapevine as a host were examined. Comparative transcriptome analysis of grapevine responses to these mite strains identified the existence of weak responses induced by the feeding of the non-adapted strain. In contrast, strong but ineffective induced defenses were triggered upon feeding of the adapted strain. A comparative meta-analysis of Arabidopsis, tomato and grapevine responses to mite feeding identified a core of 36 highly conserved genes involved in the perception, regulation and metabolism that were commonly induced in all three species by mite herbivory.

conclusionsThis study describes the genome-wide grapevine transcriptional responses to herbivory of mite strains that differ in their ability to use grapevine as a host. It raises hypotheses whose testing will lead to our understanding of grapevine defenses and mite adaptations to them.

Indexed as

Gene Expression Regulation, PlantAnimalsArabidopsisSolanum lycopersicumTetranychidaeTranscriptomeVitis

Identifiers

PMID26801623
PMCPMC4724079

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.