ArticlePlant molecular biology2016
RNA-seq transcriptional profiling of Herbaspirillum seropedicae colonizing wheat (Triticum aestivum) roots.
Article in Plant molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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Who cites it
38 citing papers in PubMed, 76 citations in OpenAlex.
- Differential proteomics of bacteria grownmSystems · 2026Article
- CRAGE-RB-PI-seq reveals transcriptional dynamics of plant-associated bacteria during root colonization.Nature communications · 2026Article
- Evolutionary mechanisms underlying bacterial adaptation to the plant environment.FEMS microbiology reviews · 2026Review
- Characterization of an AsnC/Lrp-family transcriptional regulator inFrontiers in microbiology · 2026Article
- Transcriptome-guided discovery of novel plant-associated genes in a rhizosphere Pseudomonas.Microbiome · 2025Article
- Polyhydroxybutyrates Production by Azospirillum brasilense as a Microalgal Growth Promotion Trait During COCurrent microbiology · 2025Article
- A Unique Expression Profile Responding to Powdery Mildew in Wild Emmer Wheat D430.International journal of molecular sciences · 2024Article
- Invisible Inhabitants of Plants and a Sustainable Planet: Diversity of Bacterial Endophytes and their Potential in Sustainable Agriculture.Indian journal of microbiology · 2024Review
- Bulked segregant RNA-seq reveals complex resistance expression profile to powdery mildew in wild emmer wheat W762.Frontiers in plant science · 2024Article
- An updated view of bacterial endophytes as antimicrobial agents against plant and human pathogens.Current research in microbial sciences · 2024Review
- Dual RNA-seq of maize andFrontiers in plant science · 2024Article
- Comparison of the transcriptome and metabolome of wheat (Frontiers in plant science · 2023Article
- Endophytism: A Multidimensional Approach to Plant-Prokaryotic Microbe Interaction.Frontiers in microbiology · 2022Review
- Article
- The Endophytic Microbiome as a Hotspot of Synergistic Interactions, with Prospects of Plant Growth Promotion.Biology · 2021Review
- Insights into the early stages of plant-endophytic bacteria interaction.World journal of microbiology & biotechnology · 2021Review
- Bulked Segregant RNA-Seq Provides Distinctive Expression Profile Against Powdery Mildew in the Wheat Genotype YD588.Frontiers in plant science · 2021Article
- Transcriptomic and Metabolomic Approaches Deepen Our Knowledge of Plant-Endophyte Interactions.Frontiers in plant science · 2021Review
- Modulation of the Wheat Seed-Borne Bacterial Community byFrontiers in microbiology · 2021Article
- Article
Corrections and comments
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Authors and funding
13 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Herbaspirillum seropedicae is a diazotrophic and endophytic bacterium that associates with economically important grasses promoting plant growth and increasing productivity. To identify genes related to bacterial ability to colonize plants, wheat seedlings growing hydroponically in Hoagland's medium were inoculated with H. seropedicae and incubated for 3 days. Total mRNA from the bacteria present in the root surface and in the plant medium were purified, depleted from rRNA and used for RNA-seq profiling. RT-qPCR analyses were conducted to confirm regulation of selected genes. Comparison of RNA profile of root attached and planktonic bacteria revealed extensive metabolic adaptations to the epiphytic life style. These adaptations include expression of specific adhesins and cell wall re-modeling to attach to the root. Additionally, the metabolism was adapted to the microxic environment and nitrogen-fixation genes were expressed. Polyhydroxybutyrate (PHB) synthesis was activated, and PHB granules were stored as observed by microscopy. Genes related to plant growth promotion, such as auxin production were expressed. Many ABC transporter genes were regulated in the bacteria attached to the roots. The results provide new insights into the adaptation of H. seropedicae to the interaction with the plant.
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