Evidence map›Paper›PMID 26801007›Full record

ArticlePlant biotechnology journal2016

Fusarium oxysporum mediates systems metabolic reprogramming of chickpea roots as revealed by a combination of proteomics and metabolomics.

Yashwant Kumar, Limin Zhang, Priyabrata Panigrahi, Bhushan B Dholakia, Veena Dewangan, Sachin G Chavan, Shrikant M Kunjir, Xiangyu Wu, Ning Li, Pattuparambil R Rajmohanan and 4 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
14.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 82 citations in OpenAlex.

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  12. Metal-Resistant PGPR StrainPlants (Basel, Switzerland) · 2023
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  14. Review
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  16. Sugar Transporters inInternational journal of molecular sciences · 2022
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  17. How do plants defend themselves against pathogens-Biochemical mechanisms and genetic interventions.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Yashwant KumarDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Limin ZhangKey Laboratory of Magnetic Resonance in Biological Systems, National Centre for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, China.
Priyabrata PanigrahiDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Bhushan B DholakiaDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Veena DewanganDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Sachin G ChavanDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Shrikant M KunjirCentral NMR Facility, CSIR-National Chemical Laboratory, Pune, India.
Xiangyu WuKey Laboratory of Magnetic Resonance in Biological Systems, National Centre for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, China.
Ning LiKey Laboratory of Magnetic Resonance in Biological Systems, National Centre for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, China.
Pattuparambil R RajmohananCentral NMR Facility, CSIR-National Chemical Laboratory, Pune, India.
Narendra Y KadooDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Ashok P GiriDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Huiru TangKey Laboratory of Magnetic Resonance in Biological Systems, National Centre for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, China.
Vidya S GuptaDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
National Chemical Laboratory · INChinese Academy of Sciences · CNWuhan Institute of Physics and Mathematics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular changes elicited by plants in response to fungal attack and how this affects plant-pathogen interaction, including susceptibility or resistance, remain elusive. We studied the dynamics in root metabolism during compatible and incompatible interactions between chickpea and Fusarium oxysporum f. sp. ciceri (Foc), using quantitative label-free proteomics and NMR-based metabolomics. Results demonstrated differential expression of proteins and metabolites upon Foc inoculations in the resistant plants compared with the susceptible ones. Additionally, expression analysis of candidate genes supported the proteomic and metabolic variations in the chickpea roots upon Foc inoculation. In particular, we found that the resistant plants revealed significant increase in the carbon and nitrogen metabolism; generation of reactive oxygen species (ROS), lignification and phytoalexins. The levels of some of the pathogenesis-related proteins were significantly higher upon Foc inoculation in the resistant plant. Interestingly, results also exhibited the crucial role of altered Yang cycle, which contributed in different methylation reactions and unfolded protein response in the chickpea roots against Foc. Overall, the observed modulations in the metabolic flux as outcome of several orchestrated molecular events are determinant of plant's role in chickpea-Foc interactions.

Indexed as

MetabolomicsProteomicsCicerDisease ResistanceFusariumHost-Pathogen InteractionsLigninMetabolic Networks and PathwaysNuclear Magnetic Resonance, BiomolecularPhytoalexinsPlant RootsReactive Oxygen SpeciesSesquiterpenesLigninPhytoalexinsReactive Oxygen SpeciesSesquiterpenesChickpeaFusarium oxysporummetabolomicsNMRplant-pathogen interactionproteomics

Identifiers

PMID26801007
PMCPMC5066658
OpenAlexW2271345908

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.