Evidence map›Paper›PMID 26799336›Full record

ArticleeLife2016

Revealing an outward-facing open conformational state in a CLC Cl(-)/H(+) exchange transporter.

Chandra M Khantwal, Sherwin J Abraham, Wei Han, Tao Jiang, Tanmay S Chavan, Ricky C Cheng, Shelley M Elvington, Corey W Liu, Irimpan I Mathews, Richard A Stein and 3 more

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. A large-scale evolutionary and structural analysis of CLC channels and transporters.Protein science : a publication of the Protein Society · 2025
    Article
  3. Article
  4. International journal of molecular sciences · 2024
    Article
  5. Structural basis of pH-dependent activation in a CLC transporter.Nature structural & molecular biology · 2024
    Article
  6. Fluoride Transport and Inhibition Across CLC Transporters.Handbook of experimental pharmacology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Q-cubed mutant cues clues to CLC antiport mechanism.The Journal of general physiology · 2021
    Article
  14. Divergent CleLife · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Mutation of external glutamate residue reveals a new intermediate transport state and anion binding site in a CLC ClProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Chandra M KhantwalDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Sherwin J AbrahamDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Wei HanDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, United States.
Tao JiangDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, United States.
Tanmay S ChavanDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Ricky C ChengDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Shelley M ElvingtonDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Corey W LiuStanford Magnetic Resonance Laboratory, Stanford University School of Medicine, Stanford, United States.
Irimpan I MathewsStanford Synchrotron Radiation Lightsource, Stanford University, Menlo Park, United States.
Richard A SteinDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, United States.
Hassane S MchaourabDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, United States.
Emad TajkhorshidDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID http://orcid.org/0000-0001-8434-1010
Merritt MadukeDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHOU, MING · 2010 to 2017
$31.9M
WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Mechanisms of CLC Transporters and Channels:R01GM113195 · NIGMS · STANFORD UNIVERSITY · PI MADUKE, MERRITT C · 2016 to 2024
$4.0M
Molecular Mechanisms of Active Transport Across Cellular MembranesR01GM086749 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2009 to 2013
$1.5M
NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM086749NIGMS NIH HHS R01 GM113195NIGMS NIH HHS U54 GM087519
6 · The paper itself

Abstract

CLC secondary active transporters exchange Cl(-) for H(+). Crystal structures have suggested that the conformational change from occluded to outward-facing states is unusually simple, involving only the rotation of a conserved glutamate (Gluex) upon its protonation. Using (19)F NMR, we show that as [H(+)] is increased to protonate Gluex and enrich the outward-facing state, a residue ~20 Å away from Gluex, near the subunit interface, moves from buried to solvent-exposed. Consistent with functional relevance of this motion, constriction via inter-subunit cross-linking reduces transport. Molecular dynamics simulations indicate that the cross-link dampens extracellular gate-opening motions. In support of this model, mutations that decrease steric contact between Helix N (part of the extracellular gate) and Helix P (at the subunit interface) remove the inhibitory effect of the cross-link. Together, these results demonstrate the formation of a previously uncharacterized 'outward-facing open' state, and highlight the relevance of global structural changes in CLC function.

Indexed as

Chloride ChannelsCrystallography, X-RayElectron Spin Resonance SpectroscopyEscherichia coli ProteinsMagnetic Resonance SpectroscopyModels, MolecularMolecular Dynamics SimulationProtein ConformationChloride ChannelsClC protein, E coliEscherichia coli Proteinsantiporterbiophysicscrystallizationdouble electron-electron resonance spectroscopy<i>e. coli</i>membrane exchangermembrane proteinprincipal component analysisstructural biology

Identifiers

PMID26799336
PMCPMC4769167

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.