Evidence map›Paper›PMID 26797129›Full record

ArticleThe Journal of biological chemistry2016

Substrate Specificity of the HEMK2 Protein Glutamine Methyltransferase and Identification of Novel Substrates.

Denis Kusevic, Srikanth Kudithipudi, Albert Jeltsch

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

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  17. An Adversarial DNA NMolecular cell · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Denis KusevicFrom the Institute of Biochemistry, Faculty of Chemistry, University Stuttgart, 70569 Stuttgart, Germany.
Srikanth KudithipudiFrom the Institute of Biochemistry, Faculty of Chemistry, University Stuttgart, 70569 Stuttgart, Germany.
Albert JeltschFrom the Institute of Biochemistry, Faculty of Chemistry, University Stuttgart, 70569 Stuttgart, Germany albert.jeltsch@ibc.uni-stuttgart.de.ORCID http://orcid.org/0000-0001-6113-9290
University of Stuttgart · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial HEMK2 homologs initially had been proposed to be involved in heme biogenesis or to function as adenine DNA methyltransferase. Later it was shown that this family of enzymes has protein glutamine methyltransferase activity, and they methylate the glutamine residue in the GGQ motif of ribosomal translation termination factors. The murine HEMK2 enzyme methylates Gln(185) of the eukaryotic translation termination factor eRF1. We have employed peptide array libraries to investigate the peptide sequence recognition specificity of murine HEMK2. Our data show that HEMK2 requires a GQX3R motif for methylation activity. In addition, amino acid preferences were observed between the -3 and +7 positions of the peptide substrate (considering the target glutamine as 0), including a preference for Ser, Arg, and Gly at the +1 and a preference for Arg at the +7 position. Based on our specificity profile, we identified several human proteins that contain putative HEMK2 methylation sites and show that HEMK2 methylates 58 novel peptide substrates. After cloning, expression, and purification of the corresponding protein domains, we confirmed methylation for 11 of them at the protein level. Transfected CHD5 (chromodomain helicase DNA-binding protein 5) and NUT (nuclear protein in testis) were also demonstrated to be methylated by HEMK2 in human HEK293 cells. Our data expand the range of proteins potentially subjected to glutamine methylation significantly, but further investigation will be required to understand the function of HEMK2-mediated methylation in proteins other than eRF1.

Indexed as

Protein Processing, Post-TranslationalAmino Acid MotifsAmino Acid SequenceAnimalsDNA HelicasesHEK293 CellsHumansMethylationMiceNeoplasm ProteinsNerve Tissue ProteinsNuclear ProteinsOncogene ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)Substrate SpecificityCHD5 protein, humanDNA HelicasesNeoplasm ProteinsNerve Tissue ProteinsNuclear ProteinsNUTM1 protein, humanOncogene ProteinsPRED28 protein, mouseSite-Specific DNA-Methyltransferase (Adenine-Specific)enzymeenzyme catalysisenzyme specificitymethylglutaminepost-translational modification (PTM)protein methylationS-adenosylmethionine (SAM)

Identifiers

PMID26797129
PMCPMC4813560
OpenAlexW2290890274

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.