Evidence map›Paper›PMID 26796657›Full record

ArticleJournal of structural biology2016

Loop-to-helix transition in the structure of multidrug regulator AcrR at the entrance of the drug-binding cavity.

Babu A Manjasetty, Andrei S Halavaty, Chi-Hao Luan, Jerzy Osipiuk, Rory Mulligan, Keehwan Kwon, Wayne F Anderson, Andrzej Joachimiak

Abstract read
In one paragraph

Article in Journal of structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Babu A ManjasettyEuropean Molecular Biology Laboratory (EMBL), Grenoble Outstation, 71 avenue des Martyrs, F-38042 Grenoble, France; Unit of Virus-Host Cell Interactions (UVHCI), University of Grenoble Alpes, F-38042 Grenoble, France.
Andrei S HalavatyBiochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Chicago, IL 60611, United States; Center for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States. Electronic address: a-halavaty@northwestern.edu.
Chi-Hao LuanCenter for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States; High Throughput Analysis Laboratory, Northwestern University, 2205 Tech Drive, Evanston, IL 60208, United States.
Jerzy OsipiukCenter for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States; Computational Institute, The University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, United States; Structural Biology Center, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, United States.
Rory MulliganCenter for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States; Computational Institute, The University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, United States; Structural Biology Center, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, United States.
Keehwan KwonCenter for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States; Infectious Diseases, J. Craig Venter Institute, 9714 Medical Center Dr. Rockville, MD 20850, United States.
Wayne F AndersonBiochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Chicago, IL 60611, United States; Center for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States.
Andrzej JoachimiakCenter for Structural Genomics of Infectious Diseases (CSGID), 303 East Chicago Avenue, Chicago, IL 60626, United States; Computational Institute, The University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, United States; Structural Biology Center, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, United States. Electronic address: andrzejj@anl.gov.

Funding

NIAID NIH HHS HHSN272200700058CNIAID NIH HHS HHSN272201200026C
6 · The paper itself

Abstract

Multidrug transcription regulator AcrR from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 belongs to the tetracycline repressor family, one of the largest groups of bacterial transcription factors. The crystal structure of dimeric AcrR was determined and refined to 1.56Å resolution. The tertiary and quaternary structures of AcrR are similar to those of its homologs. The multidrug binding site was identified based on structural alignment with homologous proteins and has a di(hydroxyethyl)ether molecule bound. Residues from helices α4 and α7 shape the entry into this binding site. The structure of AcrR reveals that the extended helical conformation of helix α4 is stabilized by the hydrogen bond between Glu67 (helix α4) and Gln130 (helix α7). Based on the structural comparison with the closest homolog structure, the Escherichia coli AcrR, we propose that this hydrogen bond is responsible for control of the loop-to-helix transition within helix α4. This local conformational switch of helix α4 may be a key step in accessing the multidrug binding site and securing ligands at the binding site. Solution small-molecule binding studies suggest that AcrR binds ligands with their core chemical structure resembling the tetracyclic ring of cholesterol.

Indexed as

Protein DomainsProtein Structure, SecondaryAmino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularCrystallography, X-RayHydrogen BondingLigandsModels, MolecularProtein BindingRepressor ProteinsSalmonella typhimuriumSequence Homology, Nucleic AcidBacterial ProteinsLigandsRepressor ProteinsLoop-to-helix transitionMultidrug resistanceTetR/AcrRTranscription regulator

Identifiers

PMID26796657
PMCPMC6886526

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.