Evidence map›Paper›PMID 26795478›Full record

ArticleMethods in enzymology2016

Methods for Determining the Cellular Functions of Vimentin Intermediate Filaments.

Karen M Ridge, Dale Shumaker, Amélie Robert, Caroline Hookway, Vladimir I Gelfand, Paul A Janmey, Jason Lowery, Ming Guo, David A Weitz, Edward Kuczmarski and 1 more

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

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  15. Increased expression of desmin and vimentin reduces bladder smooth muscle contractility via JNK2.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Karen M RidgeDivision of Pulmonary and Critical Care Medicine, Chicago, Illinois, USA; Department of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA; Veterans Administration, Chicago, Illinois, USA. Electronic address: kridge@northwestern.edu.
Dale ShumakerDivision of Pulmonary and Critical Care Medicine, Chicago, Illinois, USA; Department of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA.
Amélie RobertDepartment of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA.
Caroline HookwayDepartment of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA.
Vladimir I GelfandDepartment of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA.
Paul A JanmeyInstitute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA; Departments of Physiology and Physics & Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jason LoweryDivision of Pulmonary and Critical Care Medicine, Chicago, Illinois, USA.
Ming GuoSchool of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, USA.
David A WeitzSchool of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, USA; Department of Physics, Harvard University, Cambridge, Massachusetts, USA.
Edward KuczmarskiDepartment of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA.
Robert D GoldmanDivision of Pulmonary and Critical Care Medicine, Chicago, Illinois, USA; Department of Cell and Molecular Biology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois, USA.
Northwestern University · USPulmonary and Critical Care Associates · USHarvard University · USUniversity of Pennsylvania · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Role of LUBAC and Na K-ATPase in Acute Lung InjuryP01HL071643 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHANDEL, NAVDEEP S · 2003 to 2019
$30.8M
Structural basis of the specific protein-protein interactions underlying IF assemP01GM096971 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GOLDMAN, ROBERT D · 2011 to 2021
$16.8M
REGULATION OF MYOSIN DRIVEN ORGANELLE TRANSPORTR01GM052111 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GELFAND, VLADIMIR I · 1999 to 2018
$8.3M
Pathological consequences of altered tissue mechanics in fibrosisR01EB017753 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI JANMEY, PAUL A, SHENOY, VIVEK · 2014 to 2025
$6.3M
Role of vimentin in influenza A-induced acute lung injuryR01HL124664 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RIDGE, KAREN M · 2014 to 2015
$767k
MICROTUBULE MOTORS--SPECIFICITY AND REGULATIONR55GM052111 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GELFAND, VLADIMIR I · 1995 to 1995
–
NCI NIH HHS P30 CA060553NHLBI NIH HHS HL124664NHLBI NIH HHS HL71643NHLBI NIH HHS P01 HL071643NHLBI NIH HHS R01 HL124664NIBIB NIH HHS EB017753NIBIB NIH HHS R01 EB017753NIGMS NIH HHS GM052111NIGMS NIH HHS GM096971NIGMS NIH HHS P01GM09697NIGMS NIH HHS P01 GM096971NIGMS NIH HHS P01GM096971NIGMS NIH HHS R01 GM052111
6 · The paper itself

Abstract

The type III intermediate filament protein vimentin was once thought to function mainly as a static structural protein in the cytoskeleton of cells of mesenchymal origin. Now, however, vimentin is known to form a dynamic, flexible network that plays an important role in a number of signaling pathways. Here, we describe various methods that have been developed to investigate the cellular functions of the vimentin protein and intermediate filament network, including chemical disruption, photoactivation and photoconversion, biolayer interferometry, soluble bead binding assay, three-dimensional substrate experiments, collagen gel contraction, optical-tweezer active microrheology, and force spectrum microscopy. Using these techniques, the contributions of vimentin to essential cellular processes can be probed in ever further detail.

Indexed as

AnimalsCollagenHumansIntermediate FilamentsVimentinCollagenVimentinBiolayer interferometryCollagen gel contractionForce spectrum microscopyGigaxoninOptical tweezersPhotoactivationPhotoconversionThree-dimensional substrateVimentinWithaferin A

Identifiers

PMID26795478
PMCPMC4851442
OpenAlexW2203095742

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.