Evidence map›Paper›PMID 26794529›Full record

ArticleMethods in cell biology2016

Isolation and analyses of axonal ribonucleoprotein complexes.

Ella Doron-Mandel, Stefanie Alber, Juan A Oses, Katalin F Medzihradszky, Alma L Burlingame, Mike Fainzilber, Jeffery L Twiss, Seung Joon Lee

Open access · greenAbstract read
In one paragraph

Article in Methods in cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Squid Giant Axons Synthesize NF Proteins.Molecular neurobiology · 2018
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ella Doron-MandelDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.
Stefanie AlberDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.
Juan A OsesMass Spectrometry Facility, Department of Pharmaceutical Chemistry, UCSF, San Francisco, CA, USA.
Katalin F MedzihradszkyMass Spectrometry Facility, Department of Pharmaceutical Chemistry, UCSF, San Francisco, CA, USA.
Alma L BurlingameMass Spectrometry Facility, Department of Pharmaceutical Chemistry, UCSF, San Francisco, CA, USA.
Mike FainzilberDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.
Jeffery L TwissDepartment of Biological Sciences, University of South Carolina, Columbia, SC, USA.
Seung Joon LeeDepartment of Biological Sciences, University of South Carolina, Columbia, SC, USA.
University of California, San Francisco · USWeizmann Institute of Science · ILUniversity of South Carolina · US

Funding

Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
Translation during Nerve RegenerationR01NS041596 · NINDS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI TWISS, JEFFERY L · 2001 to 2018
$4.0M
Purchase of Q-Exactive Mass SpectrometerS10OD016229 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2013 to 2013
$507k
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103481NIGMS NIH HHS P41-GM103481NIH HHS S10 OD016229NIH HHS S10-OD016229NINDS NIH HHS R01 NS041596NINDS NIH HHS R01-NS041596
6 · The paper itself

Abstract

Cytoskeleton-dependent RNA transport and local translation in axons are gaining increased attention as key processes in the maintenance and functioning of neurons. Specific axonal transcripts have been found to play roles in many aspects of axonal physiology including axon guidance, axon survival, axon to soma communication, injury response and regeneration. This axonal transcriptome requires long-range transport that is achieved by motor proteins carrying transcripts as messenger ribonucleoprotein (mRNP) complexes along microtubules. Other than transport, the mRNP complex plays a major role in the generation, maintenance, and regulation of the axonal transcriptome. Identification of axonal RNA-binding proteins (RBPs) and analyses of the dynamics of their mRNPs are of high interest to the field. Here, we describe methods for the study of interactions between RNA and proteins in axons. First, we describe a protocol for identifying binding proteins for an RNA of interest by using RNA affinity chromatography. Subsequently, we discuss immunoprecipitation (IP) methods allowing the dissection of protein-RNA and protein-protein interactions in mRNPs under various physiological conditions.

Indexed as

AnimalsAxonsCells, CulturedChromatography, AffinityImmunoprecipitationMass SpectrometryMiceMicrotubulesRatsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA TransportSciatic NerveTranscriptomemessenger ribonucleoproteinRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerAxon transportProteomicsRNA-binding proteinRNPSciatic nerve

Identifiers

PMID26794529
PMCPMC4924573
OpenAlexW2410957280

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.